Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_023612.1 Length=39078 Score E Sequences producing significant alignments: (Bits) Value seq59718 105 2e-18 seq101358 91.5 4e-14 >seq59718 Length=6799 Score = 105 bits (116), Expect = 2e-18 Identities = 243/362 (67%), Gaps = 3/362 (1%) Strand=Plus/Minus Query 35709 AAAATGGCGCTGCCGCCTTGTCATTTTGCCTTTCAATTCAACGTCACCGATGGAAAATTA 35768 || ||||| | ||||||||||||| | || |||||| |||| | || ||||||||| Sbjct 1894 AACATGGCCTTACCGCCTTGTCATTCTTTGTTCCAATTCTACGTTGCTGACGGAAAATTA 1835 Query 35769 AATTGTATGGTTTACCAACGCAGCGGAGATATGTTTTTAGGGGTACCGTTTAACATCGCC 35828 | || | |||||| | |||| |||| || ||||| || || |||||||| || Sbjct 1834 AGCTGCCAATTGTACCAAAGAAGCGCGGATACTTTCTTAGGCGTTCCATTTAACATTGCA 1775 Query 35829 GGTTATGCAGCTATAACCATGATGATTGCCCAATTAACCAATTTAGAGCCGGGCGAGCTT 35888 ||| ||| | || |||||| |||| ||| || | |||| || |||||| | Sbjct 1774 TCTTACGCATTGCTCACAATGATGCTTGCACAAGTATGCGATTTGGAATTGGGCGACTTC 1715 Query 35889 GTCCATGCTATCGCAGACGCGCACATTTATTTAAATCACATCGAGCAAGTAAAGGAACAA 35948 || ||| | ||| || || ||||||||| || || | || ||||| || |||| Sbjct 1714 GTTCATACCTTCGGTGATGCACACATTTATAGTAACCATCTTGAACAAGTGGAGTTACAA 1655 Query 35949 TTAAGCCGCGAGCCGCGACCGCTGCCG-CAATTAAAAATTAGACCGAAA-AAGAG-CATT 36005 |||||| | || | ||||| |||| |||| | | |||| || || |||| Sbjct 1654 TTAAGCAGGGACTTCAAAGAATTGCCGACAATGAAAATGAACCCTGAAATAAAAGACATT 1595 Query 36006 GACGAATATTGGTTTGATGATTTTGAGCTTATCGGATACAACCCGCACCCGGCGATTAAA 36065 | || | | ||| |||||||| |||||| ||| | ||||||||| || ||| Sbjct 1594 TTTGCATTTACATATGAAGATTTTGAACTTATCAATTACGATCCGCACCCGCACATCAAA 1535 Query 36066 GG 36067 || Sbjct 1534 GG 1533 >seq101358 Length=430 Score = 91.5 bits (100), Expect = 4e-14 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 33256 ATGAGCGATTTGCGAGAAAGCGGCCAAATTGAGCAAGATGCCGATATAATACAATTTTTG 33315 ||||| |||||||| ||| ||| ||||||||||||||||||| | || |||| | Sbjct 58 ATGAGTGATTTGCGCGAATCTGGCGCAATTGAGCAAGATGCCGATTTGATTTTATTTATC 117 Query 33316 TATCGTGATGATTATTATAACCCGGATACCGAAAATAAAAACATCATTGAGGTTATCGTG 33375 ||||| ||||| ||||||||| |||| |||| ||||| || | || |||| || Sbjct 118 TATCGAGATGAGGTTTATAACCCCGATAGCGAAGATAAAGGCACCGCAGAAATTATTGTC 177 Query 33376 GCGAAACACCGAAACGGCCC 33395 | ||||| || ||||| || Sbjct 178 GGTAAACAACGTAACGGTCC 197 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 124766070824960