Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_023693.1 Length=148612 Score E Sequences producing significant alignments: (Bits) Value seq62180 145 7e-30 seq4064 114 1e-20 seq98545 105 6e-18 >seq62180 Length=3343 Score = 145 bits (160), Expect = 7e-30 Identities = 519/802 (65%), Gaps = 16/802 (2%) Strand=Plus/Plus Query 25994 GTAATCCATTCATTTTTAAAAGCAATCTCTTCCAGGCATGCAACCTTCATACCTTGTTGC 26053 ||||| || | | || | ||||||| |||||||| || || ||||| | |||||| | Sbjct 1615 GTAATGAATCCTTCTTCATAAGCAATTTCTTCCAGACAAGCCACCTTTAAACCTTGGCGT 1674 Query 26054 TTCTCTATTGCATGAACAAATTGAGATGCTTCCA-TAA-GACTTTCATGTGTTCCTGTAT 26111 || ||||||| |||| || | ||||||| ||| |||| ||||||||||||||| Sbjct 1675 TTTTCTATTGTTTGAATGAAACTACTCGCTTCCAATAACGACT--CATGTGTTCCTGTAT 1732 Query 26112 CCAGCCAAGTGAAACCTCTTCC---TAGTTTACAGACACGTAAAGTCTTTTCTTTCCAG- 26167 | ||||| | | |||| || ||||| | || | || || | | | || Sbjct 1733 CGAGCCATGCATATCCTCGGCCCATTAGTTCA---ACTT-TCAATTCGCCTTTGTTGAGG 1788 Query 26168 TACATCTCATTTATATCCGTAATCTCTAACTCCCCTCTAGCAGAAGGTTTAACGCTCTTA 26227 || || ||||| | || || || || || |||||| ||| ||||| | | |||| Sbjct 1789 TAAATTTCATTGACTGTTGTTATTTCCAATTCGCCTCTATGAGATGGTTTTATGTTCTTC 1848 Query 26228 GCTTTCTGTATAACAGAATTATCGTAAAAGTACAAGCCTGTGATTGCGTAGTTGCttttt 26287 ||| | | | ||| || ||| || ||||| || | || | || |||| Sbjct 1849 GCTATTTCAACGACATCGTTCGTGTAGAAATACAATCCAACAACCGCAAAATTAGATTTT 1908 Query 26288 ggtgtttttggtttttCTTCAATACTCACCACTGTACC--TTCAGAATCAAACTCAACAA 26345 || | | ||||||||||| | | | || | || || | ||||| ||| ||| Sbjct 1909 GGATGTGTAGGTTTTTCTTCCACAGAGATTACATTTCCGCTTTCG--TCAAATTCAGCAA 1966 Query 26346 CACCAAATCTTTCAGGATCATTTACGTGATACCCAAAGATATTAGCTCCACCATTCTTTT 26405 | || | | |||||| || || || | ||| ||||||| | | | | || || Sbjct 1967 CGCCGTAGCGTTCAGGGTCGTTGACATAATAACCAAAGACGGTGGATTTTCGATCTACTT 2026 Query 26406 CAATATGTTCTTTAGCAGAATCTAAAATGCTACCAAAACTCTGACCAAAGAATAAATTAT 26465 ||| | || | ||| | || || || |||| || ||| ||| | ||| | Sbjct 2027 CAACGTTTTGCCTTGCATTTTTTAGCATTTTAGTCAAACCATGTCCATGGAAAATATTGT 2086 Query 26466 CACCTAGCACAAGTGCTACAGAATCTTCACCAATAAAGTTCTCACCAATAATAAACGCTT 26525 | || | || | ||| ||| |||||||||| | |||||||||||||| || | Sbjct 2087 CGCCCAAAACCAAACAGACATCATCCCCACCAATAAATTCTTCACCAATAATAAATGCCT 2146 Query 26526 CTGCTAAACCTTTTGGGCTATCCTGTATTGCATACTGTAGGGAAATACCAAAAGAAGAAC 26585 || ||||| | ||||| || | | |||| | || || ||| | | Sbjct 2147 GCGCCAAACCATCCGGGCTCGGTTGAACTTTATACGTCAAATTGATTCCGAAATTACTTC 2206 Query 26586 CATCACCTAGAAGATTTACAAAATTAATTTGATCTTCTGGTGTTGTAATTATTAGTATTT 26645 | || || || | ||| ||||||| | |||||| || |||| || |||| | | Sbjct 2207 CGTCGCCAAGCAACTTTTCAAAATTGGGTAAATCTTCAGGCGTTGAGATGATTAAGACGT 2266 Query 26646 CCCTAATTCCAGAAAGCATTAGGACAGAGAGTGGATAATAAATCATAGGTTTATCGTAAA 26705 | ||||| |||| |||||| | || || | ||||||||||||||| |||||||| |||| Sbjct 2267 CTCTAATGCCAGCAAGCATCAAAACCGATAATGGATAATAAATCATCGGTTTATCATAAA 2326 Query 26706 TTGGTAATAGTTGTTTACTAACCCCTTTAGTAACTGGGTAAAGCCTTGTTCCACTACCAC 26765 |||| | || |||||| || |||||||||| ||| || | | ||||| || | Sbjct 2327 TTGGGAGTAATTGTTTTGATACTCCTTTAGTAATTGGATACAATCGAGTTCCTGATCCGC 2386 Query 26766 CTGCTAAGATAATACCTTTCAT 26787 | ||||| || || |||||||| Sbjct 2387 CAGCTAAAATGATTCCTTTCAT 2408 >seq4064 Length=343 Score = 114 bits (126), Expect = 1e-20 Identities = 128/171 (75%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 26617 ATCTTCTGGTGTTGTAATTATTAGTATTTCCCTAATTCCAGAAAGCATTAGGACAGAGAG 26676 |||||| ||||| | ||| || | ||| || ||||| || | | ||||| || || | Sbjct 46 ATCTTCAGGTGTAGAAATAATCAATATATCTCTAATACCTGCCAACATTAAAACCGATAT 105 Query 26677 TGGATAATAAATCATAGGTTTATCGTAAATTGGTAATAGTTGTTTACTAACCCCTTTAGT 26736 ||||||| ||||||| |||||||| ||||| || |||| ||| ||| ||| |||| || Sbjct 106 TGGATAAAAAATCATCGGTTTATCATAAATAGGCAATAATTGCTTAGAAACGCCTTGCGT 165 Query 26737 AACTGGGTAAAGCCTTGTTCCACTACCACCTGCTAAGATAATACCTTTCAT 26787 || || ||||| | ||||| || |||||||| | |||||||||||| Sbjct 166 AATAGGATAAAGACGCGTTCCTGATCCGCCTGCTAATACAATACCTTTCAT 216 >seq98545 Length=462 Score = 105 bits (116), Expect = 6e-18 Identities = 208/303 (69%), Gaps = 6/303 (2%) Strand=Plus/Minus Query 26096 TCATGTGTTCCTGTATCCAGCCAAGTGAAACCTCTTCCTA-GTTTACAGACACGTAAAGT 26154 ||||| ||||||||||| ||||||| | ||||| || | | | || || ||||| | Sbjct 418 TCATGCGTTCCTGTATCTAGCCAAGCCATGCCTCTGCCCATGACTTCA-ACTTGTAAATT 360 Query 26155 CTTTTCTTTCCAGTACATCTCATTTATATCCGTAATCTCTAACTCCCCTCTAGCAGAAGG 26214 ||| | || || |||| ||| || || || || || |||| || ||||| Sbjct 359 GCCAGCTTCTAAATAAATTCGGTTTAAATCGGTGATTTCCAATTCACCTCGTGCCGAAGG 300 Query 26215 TTTAACGCTCTTAGCTTTCTGTATAACAGAATTATCGTAAAAGTACAAGCCTGTGATTGC 26274 || | | ||||| | | || ||| | ||||||||||| || | |||||| | ||| Sbjct 299 CTTCAGATTTTTAGCCATTTCTACAACGGTGTTATCGTAAAAATAGAGGCCTGTTACTGC 240 Query 26275 GTA--GTTGCtttttggtgtttttggtttttCTTCAATACTCACCACTGTACCTTCAGAA 26332 || || |||| ||| || |||||||| || | || | | || ||| ||| | Sbjct 239 ATAACGTGACTTT--GGTTTTGCAGGTTTTTCCTCTAAGCTAATCGCTACACCATCATCA 182 Query 26333 TCAAACTCAACAACACCAAATCTTTCAGGATCATTTACGTGATACCCAAAGATATTAGCT 26392 |||||||||||||||||| ||| ||||||||||| || |||| |||| | | ||| Sbjct 181 TCAAACTCAACAACACCATATCGTTCAGGATCATGCACTGGATAGGCAAATACCGTTGCT 122 Query 26393 CCA 26395 ||| Sbjct 121 CCA 119 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 474781722762240