Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_023717.1 Length=151924 Score E Sequences producing significant alignments: (Bits) Value seq97209 104 2e-17 seq40947 86.0 6e-12 seq24484 82.4 7e-11 >seq97209 Length=479 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 148134 GCTGGATTAGCTCAGTTGGTAGAGCAACTGATTTGTAATCAGAAGGTCGCGGGTTCGAAC 148193 || || |||||||||||||||||||| ||||||||||||||| ||||||||||||||| Sbjct 267 GCCGGCTTAGCTCAGTTGGTAGAGCACCTGATTTGTAATCAGGGGGTCGCGGGTTCGAAT 326 Query 148194 CCTGCATCCAGCACCAG 148210 |||||| || ||||||| Sbjct 327 CCTGCAGCCGGCACCAG 343 >seq40947 Length=228 Score = 86.0 bits (94), Expect = 6e-12 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 148141 TAGCTCAGTTGGTAGAGCAACTGATTTGTAATCAGAAGGTCGCGGGTTCGAACCCTG 148197 |||||||| |||||||||||||||||||||||||| ||||| |||||||||| |||| Sbjct 169 TAGCTCAGCTGGTAGAGCAACTGATTTGTAATCAGTAGGTCCCGGGTTCGAATCCTG 225 >seq24484 Length=264 Score = 82.4 bits (90), Expect = 7e-11 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 148140 TTAGCTCAGTTGGTAGAGCAACTGATTTGTAATCAGAAGGTCGCGGGTTCGAACCCTGCA 148199 ||||||||||||||||||||||||| |||||||||| ||||||| |||||| || ||| Sbjct 120 TTAGCTCAGTTGGTAGAGCAACTGACTTGTAATCAGTAGGTCGCCAGTTCGACTCCGGCA 179 Query 148200 TCCAGCACCA 148209 | |||||| Sbjct 180 GTCGGCACCA 189 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 485365662305280