Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_024354.1 Length=149162 Score E Sequences producing significant alignments: (Bits) Value seq65074 100 3e-16 seq60251 89.7 5e-13 seq97209 86.0 6e-12 >seq65074 Length=2491 Score = 100 bits (110), Expect = 3e-16 Identities = 64/70 (91%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 146732 TAGCGCAGCCTGGTAGCGCATCTGGTTTGGGACCAGAGGGTCGCTGGTTCGATTCCAGCT 146791 |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| || Sbjct 94 TAGCGCAGCCTGGTAGCGCATCTGGTTTGGGACCAGAGGGTCGCAGGTTCGAATCCTGCC 35 Query 146792 ACACCGACCA 146801 | ||||||| Sbjct 34 GCTCCGACCA 25 >seq60251 Length=5058 Score = 89.7 bits (98), Expect = 5e-13 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 146725 CGGTGTATAGCGCAGCCTGGTAGCGCATCTGGTTTGGGACCAGAGGGTCGCTGGTTCGAT 146784 ||| || ||||||||||||||||||||||||||||||||| ||||||||| ||||||| Sbjct 2467 CGGGGTGTAGCGCAGCCTGGTAGCGCATCTGGTTTGGGACTAGAGGGTCGTAGGTTCGAA 2408 Query 146785 TCCAGCTACACCGACCA 146801 ||| || ||||||| Sbjct 2407 TCCTATCACCCCGACCA 2391 >seq97209 Length=479 Score = 86.0 bits (94), Expect = 6e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 144252 GCTGGATTAGCTCAGTAGGTAGAGCGCCTCACTTGTAATGAGGATGTCGCGGGTTCGATT 144311 || || |||||||||| |||||||| ||| | ||||||| ||| ||||||||||||| | Sbjct 267 GCCGGCTTAGCTCAGTTGGTAGAGCACCTGATTTGTAATCAGGGGGTCGCGGGTTCGAAT 326 Query 144312 CCTGCATCCAGCACCAG 144328 |||||| || ||||||| Sbjct 327 CCTGCAGCCGGCACCAG 343 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476539321418240