Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_024367.1 Length=75028 Score E Sequences producing significant alignments: (Bits) Value seq84156 127 1e-24 >seq84156 Length=807 Score = 127 bits (140), Expect = 1e-24 Identities = 168/233 (72%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 46316 ACGCCCTTCACAGGTGCTCCCTTCGGACGAAGGGTACTGAAGTCATAACCAATCCCACCG 46375 |||||| | || ||||||||| | || ||||| || |||||||| || || |||||| Sbjct 787 ACGCCCCTGACCGGTGCTCCCCTGGGGCGAAGCGTGGAGAAGTCATGGCCGATACCACCG 728 Query 46376 CCTTGCTGCATCGTGAGAGCAGCTTCCTTGAGCATATCGAAGATACCATCAAGGCTGTCA 46435 ||||||||||| || || || || || || ||||||||| | | | | ||| Sbjct 727 CCTTGCTGCATGGTCAGTGCGGCCTCGCGCAGTCCATCGAAGATCGCGCCCATGTCGTCT 668 Query 46436 GGGATGGTTCCCATGACATAGCAGTTGAACAAGGTCACGTTGCGTCCCGTACCTGCACCG 46495 | |||| |||||||||| |||||||||||| || || ||||| | || || || ||| Sbjct 667 TGAATGGCTCCCATGACAAAGCAGTTGAACAGCGTAACCTTGCGCTCGGTGCCCGCGCCG 608 Query 46496 GAATTAATCCGTCCTGCTGGTAGGAACTTGAAATCATACAGGGCTTTGAAGAA 46548 | | | ||||| || || || ||||||||| | | ||| ||| | ||| || Sbjct 607 GCAATGATCCGGCCAGCCGGCAGGAACTTGTAGCCGGACATGGCGTCGAAAAA 555 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 239645577226208