Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_024369.2 Length=41569 Score E Sequences producing significant alignments: (Bits) Value seq59983 87.8 5e-13 >seq59983 Length=5794 Score = 87.8 bits (96), Expect = 5e-13 Identities = 183/268 (68%), Gaps = 10/268 (4%) Strand=Plus/Plus Query 38205 AGGTGTAAACAAGGTGATCTTAATTGGTCACCTTGGTCAAGATCCAGAGGTGCGCTA-TC 38263 |||||||||||| || || | ||||| | | ||| | || ||||| || || || || Sbjct 39 AGGTGTAAACAAAGTAATTATCGTTGGTAATTTGGGTAACGACCCAGAAGTTCGTTATTC 98 Query 38264 TACCAAGCGGCGGCGCAGTGGCAAACATCACAATAGCAACGTCTGAGGTTTGGCGGGATA 38323 | ||| ||||| ||| | |||||||||| ||||||| || || |||| || | Sbjct 99 GAACAA-CGGCGCCGCGATTGCAAACATCAGCGTAGCAACATCGGAAAATTGGAAAGACA 157 Query 38324 AGCAAACCGGACAGCCAAAAGAGAAAACAGAGTGGCACCGAGTTACTTTGTTTGGGAAGC 38383 || | ||||| ||| ||||| || |||||||| || | || ||||| || | Sbjct 158 AGAACACCGGCGAGCGCCAAGAGCGCACCGAGTGGCATAGAATCACCTTGTT---CAATC 214 Query 38384 ----TGGCTGAAGTTGCTGGCGAATACCTTCGAAAAGGATCTCATGTTTATATTGAAGGC 38439 |||| ||||| || ||||| |||||| ||| || || | || || || |||||| Sbjct 215 GCCTTGGC-GAAGTGGCCGGCGAGTACCTTAAAAAGGGCTCAAAGGTCTACATCGAAGGC 273 Query 38440 CAGCTTGAAACTAAGAAGTGGCGGGATC 38467 || | |||| || |||| ||||| Sbjct 274 AAGTTACAAACCCGAAAATGGCAGGATC 301 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132726938714944