Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq108602 196 9e-45 seq19544 196 9e-45 seq97248 159 7e-34 seq44811 158 2e-33 seq87644 141 2e-28 seq56753 122 2e-22 seq88500 98.7 2e-15 seq80117 95.1 2e-14 >seq108602 Length=371 Score = 196 bits (216), Expect = 9e-45 Identities = 180/228 (79%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 |||||||| | | || || || || |||||||||||||| || || |||||||| ||| Sbjct 121 CCTCCTCTAAGTCTGAGGACCAAATGGAGAGTAGATTCTTTTTGAATGTTATAATCTGAT 180 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| ||||||||||||||| |||||||||||||||||| ||||| ||||| ||||| || Sbjct 181 AGAGTTCTACCGTCTTCTAATTGTTTTCCAGCAAAGATAAGTCTCTGTTGGTCTGGTGGA 240 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 ||||| || |||||||||||||| | || ||||| || || || ||| |||| || Sbjct 241 ATTCCCTCTTTATCTTGAATCTTAGTCTTGACATTGTCGATGGTGTCAGATTGTTCAACA 300 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 || || || || || || || || | ||||| ||||| ||||||||| Sbjct 301 TCTAAGGTGATGGTTTTTCCAGTAAGAGTCTTAACAAAGATCTGCATT 348 >seq19544 Length=280 Score = 196 bits (216), Expect = 9e-45 Identities = 182/229 (79%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 |||||||| | | || || || || ||||| || || ||||| ||||| ||||||||| Sbjct 50 CCTCCTCTAAGTCTAAGTACCAAATGAAGAGTGGACTCCTTCTGGATATTGTAATCAGAT 109 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | |||| || ||||||| ||| ||||| |||||||| | ||||||||||||||| || Sbjct 110 AAGGTTCTTCCATCTTCTAATTGCTTTCCTGCAAAGATCAATCTTTGTTGATCTGGTGGG 169 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATC--ATTAGGTTCTA 82761 || |||||||||||||||||||| | |||||||| ||||| ||||| ||| |||| | Sbjct 170 ATACCTTCCTTATCTTGAATCTTAGTCTTTACATTATCAATAGTATCGGATT--GTTCGA 227 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || | || || ||||| || ||||| ||||||||||| |||||||| Sbjct 228 CGTCAAGGGTAATGGTCTTTCCAGTCAAGGTCTTTACAAAGATCTGCAT 276 >seq97248 Length=461 Score = 159 bits (176), Expect = 7e-34 Identities = 174/229 (76%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 |||||||| | | || || || || ||||| || |||||||| || || ||||||||| Sbjct 409 CCTCCTCTGAGTCTAAGGACCAAATGAAGAGTGGACTCTTTCTGAATGTTGTAATCAGAT 350 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | |||| || ||||||| ||| |||||||| ||||| | ||| ||||||||||| || Sbjct 349 AATGTTCTTCCATCTTCTAATTGCTTTCCAGCGAAGATCAATCTCTGTTGATCTGGTGGG 290 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATC--ATTAGGTTCTA 82761 || ||||| || ||||||||||| | || || || ||||| ||||| ||| | || | Sbjct 289 ATGCCTTCTTTGTCTTGAATCTTAGTCTTGACGTTGTCAATAGTATCTGATT--GCTCAA 232 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || || || || ||||| || || || |||||||| || || ||||| Sbjct 231 CATCTAAGGTAATTGTCTTACCAGTTAAAGTCTTTACGAAGATTTGCAT 183 >seq44811 Length=222 Score = 158 bits (174), Expect = 2e-33 Identities = 135/167 (81%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 |||||||| | | || || ||||| ||||||||||| ||||| || || || || || Sbjct 47 CCTCCTCTAAGTCTGAGGACCAAGTGGAGAGTAGATTCCTTCTGAATGTTGTAGTCGGAG 106 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| ||||||||||||| | ||| |||||||||||||| ||||||||||||||||| || Sbjct 107 AGAGTTCTACCGTCTTCCAATTGCTTTCCAGCAAAGATAAGTCTTTGTTGATCTGGTGGA 166 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATC 82750 |||||||| || || |||||||| | || || || ||||| ||||| Sbjct 167 ATTCCTTCTTTGTCCTGAATCTTAGTCTTAACGTTGTCAATGGTATC 213 >seq87644 Length=678 Score = 141 bits (156), Expect = 2e-28 Identities = 117/143 (82%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || ||||| || | || || | || || |||||||||||||| ||||| || |||||| Sbjct 376 CCACCTCTTAATCTGAGGACGAGATGAAGGGTAGATTCTTTCTGAATATTGTAGTCAGAT 317 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | |||| || ||||||| ||| ||||| |||||||||| |||||||||||||||||| Sbjct 316 AAGGTTCTTCCATCTTCTAATTGCTTTCCGGCAAAGATTAATCTTTGTTGATCTGGAGGA 257 Query 82704 ATTCCTTCCTTATCTTGAATCTT 82726 |||||||| ||||||||||| || Sbjct 256 ATTCCTTCTTTATCTTGAATTTT 234 >seq56753 Length=203 Score = 122 bits (134), Expect = 2e-22 Identities = 111/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 82605 AAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGT 82664 || || ||||||||||| ||||| || ||||||||||||| ||||| || ||||| | | Sbjct 152 AAATGAAGAGTAGATTCCTTCTGAATGTTATAATCAGATAAGATTCTTCCATCTTCCAAT 93 Query 82665 TGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATC 82724 |||||||||||||||| ||| | || |||| ||| | |||||||| || ||||| ||| Sbjct 92 TGTTTTCCAGCAAAGAGGAGTTTCTGATGATTTGGTGAAATTCCTTCTTTGTCTTGGATC 33 Query 82725 TTTGCTTTTACATTTTCAAT 82744 || | |||| | |||||| Sbjct 32 TTAGTCTTTATTTCTTCAAT 13 >seq88500 Length=653 Score = 98.7 bits (108), Expect = 2e-15 Identities = 105/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 82612 GAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTC 82671 ||| ||| | | |||| || || || ||||| ||| |||| | |||||| | ||||| Sbjct 389 GAGGAGACTTTCTCTGAATGTTGTAGTCAGAGAGAGTTCTTTCACCTTCTAACTATTTTC 448 Query 82672 CAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTT 82731 |||||||| | ||||||||||| ||| || ||| ||||||| || |||||||| | | Sbjct 449 TCGCAAAGATCAATCTTTGTTGATTTGGTGGAATTTCTTCCTTGTCCTGAATCTTAGTCT 508 Query 82732 TTACATTTTCAATCGTATC 82750 |||||| ||||| |||| Sbjct 509 CTACATTATCAATACTATC 527 >seq80117 Length=1002 Score = 95.1 bits (104), Expect = 2e-14 Identities = 78/95 (82%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 ||||||| ||||||||| |||| || ||||||||||||||||| || ||||||||| || Sbjct 366 TCTTCTAATTGTTTTCCTCCAAATATAAGTCTTTGTTGATCTGGTGGAATTCCTTCCATA 425 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATC 82750 |||||||| ||| ||||| || ||| ||||| Sbjct 426 TCTTGAATATTTATTTTTAAATCCGAAATAGTATC 460 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 980454104842528