Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq19544 98.7 2e-15 seq108602 91.5 3e-13 seq44811 89.7 9e-13 seq87644 84.2 4e-11 >seq19544 Length=280 Score = 98.7 bits (108), Expect = 2e-15 Identities = 104/139 (75%), Gaps = 11/139 (8%) Strand=Plus/Plus Query 81644 AGAGTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA------- 81696 ||||| | |||||||| ||||| |||||||||| ||||| | |||||||| Sbjct 77 AGAGTGGACTCCTTCTGGATATTGTAATCAGATAAGGTTCTTCCATCTTCTAATTGCTTT 136 Query 81697 ----CAAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCT 81752 ||||||| | |||||||||| |||| | || ||||||||||||||||||| | Sbjct 137 CCTGCAAAGATCAATCTTTGTTGATCTGGTGGGATACCTTCCTTATCTTGAATCTTAGTC 196 Query 81753 TTTATATTTTCAATCGTAT 81771 |||| ||| ||||| |||| Sbjct 197 TTTACATTATCAATAGTAT 215 >seq108602 Length=371 Score = 91.5 bits (100), Expect = 3e-13 Identities = 101/137 (74%), Gaps = 11/137 (8%) Strand=Plus/Plus Query 81644 AGAGTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA------- 81696 |||||| |||| || || || |||||||| ||||||||||||| ||||||||| Sbjct 148 AGAGTAGATTCTTTTTGAATGTTATAATCTGATAGAGTTCTACCGTCTTCTAATTGTTTT 207 Query 81697 ----CAAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCT 81752 ||||||| ||||| ||||| |||| | ||| | || |||||||||||||| | Sbjct 208 CCAGCAAAGATAAGTCTCTGTTGGTCTGGTGGAATTCCCTCTTTATCTTGAATCTTAGTC 267 Query 81753 TTTATATTTTCAATCGT 81769 || | ||| || || || Sbjct 268 TTGACATTGTCGATGGT 284 >seq44811 Length=222 Score = 89.7 bits (98), Expect = 9e-13 Identities = 102/139 (73%), Gaps = 11/139 (8%) Strand=Plus/Plus Query 81644 AGAGTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA------- 81696 |||||| |||||||||| || || || || || |||||||||| |||||| || Sbjct 74 AGAGTAGATTCCTTCTGAATGTTGTAGTCGGAGAGAGTTCTACCGTCTTCCAATTGCTTT 133 Query 81697 ----CAAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCT 81752 ||||||| |||||||||||| |||| | ||| |||| || || |||||||| | Sbjct 134 CCAGCAAAGATAAGTCTTTGTTGATCTGGTGGAATTCCTTCTTTGTCCTGAATCTTAGTC 193 Query 81753 TTTATATTTTCAATCGTAT 81771 || | || ||||| |||| Sbjct 194 TTAACGTTGTCAATGGTAT 212 >seq87644 Length=678 Score = 84.2 bits (92), Expect = 4e-11 Identities = 87/116 (75%), Gaps = 11/116 (9%) Strand=Plus/Minus Query 81644 AGAGTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA------- 81696 || ||| |||| ||||| ||||| || ||||||| ||||| | |||||||| Sbjct 349 AGGGTAGATTCTTTCTGAATATTGTAGTCAGATAAGGTTCTTCCATCTTCTAATTGCTTT 290 Query 81697 ----CAAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTT 81748 ||||||||| |||||||||| ||||| | ||| |||| ||||||||||| || Sbjct 289 CCGGCAAAGATTAATCTTTGTTGATCTGGAGGAATTCCTTCTTTATCTTGAATTTT 234 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 902178585758720