Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq59922 289 7e-73 seq64137 196 1e-44 seq75063 113 1e-19 seq60591 102 2e-16 seq60879 95.1 3e-14 seq18475 87.8 4e-12 >seq59922 Length=6033 Score = 289 bits (320), Expect = 7e-73 Identities = 449/638 (70%), Gaps = 5/638 (1%) Strand=Plus/Plus Query 110510 ACAATTGGCTTCTTGCTTTCTTCTAGGAATTAACGATGATTCTATTGAAGGTATTTATGA 110569 |||| || | ||||| || ||| || ||| || || ||| ||||||||| |||||||| Sbjct 1890 ACAAATGTCATCTTGTTTCCTTTTAACAATGAAGGAAGATAGTATTGAAGGAATTTATGA 1949 Query 110570 TGCTCTTAAAGAAACTGCTCTTATTTCTAAAAACTCTGGAGGAATTGGTATTCACGTT-C 110628 | | ||| || ||||| || ||| || |||| |||||||| ||| | | | Sbjct 1950 CACATTAAAACAATGTGCTCAGATCTCTCAATCAGCTGGTGGAATTGG-ATTGGCTATGC 2008 Query 110629 ATGATATTCGCTCAAAAGGAGCAAATATCGCAACAGCGAAGGGTGCTTCAACTGGACTTG 110688 | | || || | | ||| || | ||| | | | || |||||||| | || | | Sbjct 2009 ACAACATCCGTGCGACAGGTTCATACATCAAAGGAACAAACGGTGCTTCTAACGGTATCG 2068 Query 110689 TTCCAATGTTAAGAGTCTTCAACGACACTGCAAAATATGTGAATCAAGGTGGT---AAGA 110745 |||||||||||||||| || ||||| ||||| | ||| || |||||||||| || Sbjct 2069 TTCCAATGTTAAGAGTATTTAACGATACTGCTAGATACGTAGATCAAGGTGGAGGAAAAC 2128 Query 110746 GAAATGGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAG 110805 | || || || || || || || | || ||||||||| | ||| ||||||| ||||||| Sbjct 2129 GTAAAGGTTCTTTCGCAATGTACTTGGAGCCTTGGCATGCTGATGTATTTGACTTCTTAG 2188 Query 110806 AACTTCGTAAAAATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATGT 110865 | | |||||||| || ||||| ||||||||| | ||||||||||| || ||| Sbjct 2189 ACTTGAAGAAAAATCACGGTAAAGAAGAGCAAAGAGCAAGAGATTTATTTTACGCTTTGT 2248 Query 110866 GGATTTCAGATTTATTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTATGTGTC 110925 || || |||||||||||||| ||||||| |||||||||| |||| || | ||||||| Sbjct 2249 GGGTTCCAGATTTATTCATGCAACGTGTGAAAGAAAATGGAGAGTGGACTTTAATGTGTC 2308 Query 110926 CTCATCGTTCTCCTGGTCTATCTGATGTATATGGAAAAGAGTTTGAAGACCTTTACGAAA 110985 | || | || ||||| || ||||| | | || || |||| | ||| | Sbjct 2309 CGCACGAATGCCCAGGTCTTTCAGATGTGCACAGTGCTGAATTCGAAGCGTTGTACACGA 2368 Query 110986 AATATGAAAAAGAAGGCAAGTTTCGCAAACAAATTCCAGCTCAAGAACTTTGGTTCAAAA 111045 | || ||||||| ||| || | ||| ||| ||| ||||| ||||||||||||| Sbjct 2369 AGTACGAAAAAGCAGGGAAAGGAAGAAAAACAATCAAAGCACAAGACCTTTGGTTCAAAA 2428 Query 111046 TCCTTGAATCACAAGTTGAAACTGGAACTCCTTATATTTTGTATAAAGATCATATTAATC 111105 || | ||||| ||| |||| || || |||||||| || ||||| |||||| | || Sbjct 2429 TCTTAGAATCTCAAATTGAGACAGGTACTCCTTACATGTTGTACAAAGATGCTGCAAACT 2488 Query 111106 GCAAATCTAATCAAATGAATTTAGGAACAATTAAGTCT 111143 ||||| || ||| || ||||| |||||||||||| Sbjct 2489 CAAAATCAAACCAACAAAACTTAGGTACAATTAAGTCT 2526 >seq64137 Length=2701 Score = 196 bits (216), Expect = 1e-44 Identities = 557/842 (66%), Gaps = 13/842 (2%) Strand=Plus/Plus Query 110307 TTTGGTTTCAAAACTCTTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGATCATTGAA 110366 ||||| ||||| ||||||||| | | |||||||| || || | | || |||| Sbjct 599 TTTGGGTTCAAGACTCTTGAAAGATCATATTTACTAAAAGTAAACGATAAAATTGTTGAG 658 Query 110367 CGTCCTCA-ACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTAAAGC 110425 | || || ||| ||| || | | || | |||||||||||| |||| | || | Sbjct 659 AGACCACAGACA-ATGCTTATGAGAGTCTCTATTGGTATTCATAAGAATGACTTAGAATC 717 Query 110426 TGTTATTGAATGTTATGATGTATTAAGTAAAAAGAAAGCT-ATTCATGCTACTCCTACCC 110484 || |||| |||||| | | ||| | || | | | | || || || || |||| Sbjct 718 TGCATTTGAGACATATGATCTCATGAGTCAGAA-ATGGTTCACACACGCCACACCAACCC 776 Query 110485 TATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTTCTTCTAGGAATTAACG 110544 | ||||| || || || | |||| || ||| |||||| | ||| ||| | Sbjct 777 TCTTTAATGCTGGTACCCCAAAACCACAAATGAGTTCATGCTTTTTATTAGCAATGCGGG 836 Query 110545 ATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCTCTTATTTCTAAAAACT 110604 ||||||| |||||||| |||| || | | || || |||| |||| ||||| || Sbjct 837 ATGATTCAATTGAAGGAATTTTCGAAACATTACAACAATGTGCTATTATCTCTAAGAATG 896 Query 110605 CTGGAGGAATTGGTATTCAC-GTTCATGATATTCGCTCAAAAGGAGCAAATATCGCAACA 110663 ||||||||||||| ||| | ||||| |||| | |||| | | ||| | | Sbjct 897 CTGGAGGAATTGG-ATTGGCTGTTCACTGTATTAGATCAACTTCTTCCTACATCAGAGGA 955 Query 110664 GCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAAAA 110723 | || ||| |||| ||||||||| |||||| | || |||||||| |||||||||| | Sbjct 956 ACAAACGGTCACTCAAATGGACTTGTCCCAATGCTTAGGGTCTTCAATGACACTGCAAGA 1015 Query 110724 TATGTGAATCAAGGTGG---TAAGAGAAATGGCTCATTTGCTATCTATCTCGAACCTTGG 110780 ||||| | ||||| || ||||||||| || | || |||||||| |||||||| ||| Sbjct 1016 TATGTTGACCAAGGAGGCGGTAAGAGAAAGGGAGCTTTCGCTATCTACCTCGAACCATGG 1075 Query 110781 CATTCAGATATATTTGAATTCTTAGAACTT-CGTAAAAATCAAGGATTTGAAGAACAAAG 110839 ||| ||||||| | ||| ||| | ||||| | || || || || || ||||| || Sbjct 1076 CATCCAGATATTTATGACTTCCT-TAACTTGAGGAAGAACCATGGTAAAGATGAACAGAG 1134 Query 110840 AGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGA 110899 |||| | || | || || || ||||| || ||| ||||||||| | || ||| Sbjct 1135 AGCAAGAGACCTCTTCTACGCTTTGTGGGTTAGTGATATATTCATGAGGAGAGTAGAAGC 1194 Query 110900 AAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTATATGG 110959 ||| ||| | || | ||||| || | || | | || | || Sbjct 1195 TGATGAAGACTGGACACTCTTCTGTCCAAATGAATGCCCCCAATTGTTCGAAACTTGGGG 1254 Query 110960 AAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGGCAAGTTTCGCAAACAAAT 111019 |||||| |||||||| || || || |||||||| | ||||| || | ||| | Sbjct 1255 AAAAGAATTTGAAGAACTCTATGAGAAATATGAGACTGAAGGAAAAGGAAG-AAAGACTG 1313 Query 111020 TCCA-GCTCAAGAACTTTGGTTCAAAATCCTTGAATCACAAGTTGAAACTGGAACTCCTT 111078 || | || ||| | || ||| |||||||| ||||| | || |||||| || | Sbjct 1314 TCAAGGCACAACATCTATGGAATGCCATCCTTGAGTCACAGATAGAGACTGGAGTCCCAT 1373 Query 111079 ATATTTTGTATAAAGATCATATTAATCGCAAATCTAATCAAATGAATTTAGGAACAATTA 111138 | || ||||||| |||||| |||| | |||||||| || |||| | ||||| || | Sbjct 1374 ACATGCTGTATAAGGATCATGCTAATGGAAAATCTAACCAGCAGAATCTTGGAACTATCA 1433 Query 111139 AG 111140 || Sbjct 1434 AG 1435 >seq75063 Length=1318 Score = 113 bits (124), Expect = 1e-19 Identities = 327/490 (67%), Gaps = 15/490 (3%) Strand=Plus/Minus Query 131796 TTAAAAAGAAAGCAGAATGGGCTATTAAATGGATTCAAGATGATTCCGCTAATTTTTCTA 131855 |||| ||||| || || |||||| ||||||||||| || | || | || |||| || Sbjct 615 TTAAGAAGAAGGCTGACTGGGCTTTTAAATGGATT-AATAAGAATGA-CTCATTTG-CTG 559 Query 131856 CAAGACTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCTA 131915 |||| | | || ||||||||||| ||||| || ||||| || || |||| || || | Sbjct 558 AAAGATTGATTGCGTTTGCTTGTGTAGAAGGAATTTTCTTCTCTGGGTCTTTTTGCGCAA 499 Query 131916 TCTTTTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCT 131975 | || ||| | || ||| | | ||||| || || | || || ||| | || |||| Sbjct 498 TTTTCTGGTTGAAAAAGAGATCTCTTATGCCAGGCCTTTGTTTCTCTAATGAGTTGATCT 439 Query 131976 CGAGAGATGAAGCATTGCATACTGAATTTGCTATATTAATCTATAGAAAATTTGCTGATA 132035 | |||||||| | ||| |||||||| |||||| || | |||| | | | | | ||| Sbjct 438 CAAGAGATGAGGGATTACATACTGACTTTGCTTGTTTGTTGTATAAACATATGGTTAATA 379 Query 132036 AACTTGATGAAA--ATAATATTAAACAACTTATAAGCGAAGCAGTTGATATCGAGAAGGA 132093 | | || ||| | | ||| | || || | | |||||||| | || ||| || Sbjct 378 AGGT--ATCAAATGAAAGAATTTATGAAATTTTGACTGAAGCAGTAGCAATTGAGCTTGA 321 Query 132094 GTTTATTACAGAAGCTTTG-CCTTGCAATTTGATTGGGATGAAT-GCTGACTCTATGAAG 132151 ||| | | ||| ||||| || | || || ||||| |||||| || ||| |||| Sbjct 320 ATTTGTATCTGAATCTTTGCCCGTAGAACTT-ATTGGTATGAATAGCAAACT-TATGGGA 263 Query 132152 GAGTACATTGAATTCGTTGCTGATCG--TTTAATTAACCAACTTGGATATTCCAAGATTT 132209 | || ||||| || ||||||||| | || || || |||||| | ||| | Sbjct 262 CAATATATTGAGTTTGTTGCTGATAGACTTCTCTTTAC--TCTTGGAGTACCAAAGCACT 205 Query 132210 ATAACACCCAAAACCCCTATACATGGATGGAGTCAATTTCGCTTGAAGGTAAAACGAACT 132269 || | || || | ||||||||| ||||| ||| |||| ||||| || | Sbjct 204 TCAATGCAGTTAATCCATTCGAATGGATGGACATGATTTCACTTCAAGGAAAAACTAATT 145 Query 132270 TCTTCGAAAG 132279 |||||||||| Sbjct 144 TCTTCGAAAG 135 >seq60591 Length=4514 Score = 102 bits (112), Expect = 2e-16 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 305330 GTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAA 305389 ||||| |||||||| || || || |||||| | | ||||| ||| |||||||||||| Sbjct 1584 GTTCTTTTCAATAGACAGCCTTCTTTGCATAGATTATCTATTATGAGTCATAAAGTCAAG 1643 Query 305390 GTATTATCTGGATTGACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGAT 305449 || | || | ||| | |||| |||| | || |||| || || ||||| ||| Sbjct 1644 GTTATGCCTTCAAAAACACTCAGATTTAATGAATGTTGTTGTGGTCCATACAATGCAGAT 1703 Query 305450 TTTGATGGAGATGAAATGAATATGCATGTACCTCAA 305485 |||||||||||||||||||| || ||| |||| ||| Sbjct 1704 TTTGATGGAGATGAAATGAACATTCATTTACCCCAA 1739 >seq60879 Length=4195 Score = 95.1 bits (104), Expect = 3e-14 Identities = 106/139 (76%), Gaps = 6/139 (4%) Strand=Plus/Plus Query 278201 GAAATGATATTTGGGAATTTATTGACATCTACTAATTACAAGGAAGATGAAGAGCGACTC 278260 |||||||| ||||| ||||| ||||||| | ||||| | || ||||||||| | || Sbjct 440 GAAATGATTTTTGGCCATTTACTGACATCATCAAATTATGATGACGATGAAGAGAAAGTC 499 Query 278261 ACAGGAGGCAAAAATGGATATGGGGCAAAGCTGACAAATA--TCTTCTCA-AAATGCTTT 278317 || ||||| | ||||||||||| || |||||||| |||| | |||||| |||| | | Sbjct 500 ACTGGAGGAAGGAATGGATATGGAGCTAAGCTGACTAATATTTATTCTCAGAAATTCAT- 558 Query 278318 GAAGTTGAAACTGTTGATA 278336 ||| || |||| ||||| Sbjct 559 --AGTAGAGACTGCTGATA 575 >seq18475 Length=282 Score = 87.8 bits (96), Expect = 4e-12 Identities = 132/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 110757 TTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAA 110816 |||||||||||| | || || |||||| | || |||| ||| || | || || ||| Sbjct 269 TTTGCTATCTATGTGGAGCCATGGCATGCGGACATATATGATTTTCTGGATCTGAAAAAA 210 Query 110817 AATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGAT 110876 ||||| || |||||| || || | || | |||||||| ||||||||| | ||| Sbjct 209 AATCACGGTAAGGAAGAAATGAGGGCCAGAGACCTTTTTTATGCTATGTGGATTCCGGAT 150 Query 110877 TTATTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCT 110936 |||||||||||| | || | | |||| | ||| | || ||||| ||| || | | Sbjct 149 TTATTCATGAAAAGGGTAGAGGCCAATGAAAACTGGACCCTAATGTGCCCTAATGAATGT 90 Query 110937 CCTGGTCT 110944 ||||| || Sbjct 89 CCTGGGCT 82 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1185153030431072