Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq97248 109 4e-19 seq19544 104 2e-17 seq108602 100 2e-16 >seq97248 Length=461 Score = 109 bits (120), Expect = 4e-19 Identities = 157/216 (73%), Gaps = 4/216 (2%) Strand=Plus/Minus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 |||||||| |||||| |||||| || ||||||||||| || | ||| | | | || || Sbjct 391 ACCAAATGAAGAGTGGACTCTTTCTGAATGTTGTAATCAGATAATGTTCTTCCATCTTCT 332 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 ||||| ||||| || || ||||| | ||| |||||| | || | ||||||||||| | Sbjct 331 AATTGCTTTCCAGCGAAGATCAATCTCTGTTGATCTGGTGGGATGCCTTCTTTGTCTTGA 272 Query 33661 ATTTTCTGTTTCAACATAGTC-ACGGTGTC-GCTTGATTCCACGTCAACCGTGATCGTTT 33718 || || || | || | ||| | || || | ||| || || || | || || || | Sbjct 271 ATCTT-AGTCTTGACGTTGTCAATAGTATCTGATTG-CTCAACATCTAAGGTAATTGTCT 214 Query 33719 TACCTGTTAACGTTTTTACAAAGATCTGCATAGTTG 33754 |||| ||||| || ||||| ||||| |||||| ||| Sbjct 213 TACCAGTTAAAGTCTTTACGAAGATTTGCATATTTG 178 >seq19544 Length=280 Score = 104 bits (114), Expect = 2e-17 Identities = 153/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 |||||||| |||||| ||| || || || |||||||| || | || | | | || || Sbjct 68 ACCAAATGAAGAGTGGACTCCTTCTGGATATTGTAATCAGATAAGGTTCTTCCATCTTCT 127 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 ||||| ||||| ||||| ||||| | || |||||| | || | |||||| || || | Sbjct 128 AATTGCTTTCCTGCAAAGATCAATCTTTGTTGATCTGGTGGGATACCTTCCTTATCTTGA 187 Query 33661 ATTTTCTGTTTCAACATAGTCACG-GTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719 || || || | |||| ||| || ||| | ||| ||||||| || || || || Sbjct 188 ATCTTA-GTCTTTACATTATCAATAGTATCGGATTGTTCGACGTCAAGGGTAATGGTCTT 246 Query 33720 ACCTGTTAACGTTTTTACAAAGATCTGCATAGTT 33753 || || || || |||||||||||||||||| || Sbjct 247 TCCAGTCAAGGTCTTTACAAAGATCTGCATATTT 280 >seq108602 Length=371 Score = 100 bits (110), Expect = 2e-16 Identities = 152/211 (72%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 |||||||| ||||| |||||||| ||||| ||||| || || || | |||| || Sbjct 139 ACCAAATGGAGAGTAGATTCTTTTTGAATGTTATAATCTGATAGAGTTCTACCGTCTTCT 198 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 ||||||||||| ||||| || | | ||| || ||| | || | || ||||| || | Sbjct 199 AATTGTTTTCCAGCAAAGATAAGTCTCTGTTGGTCTGGTGGAATTCCCTCTTTATCTTGA 258 Query 33661 ATTTTCTGTTTCAACATAGTC-ACGGTGTC-GCTTGATTCCACGTCAACCGTGATCGTTT 33718 || || || | |||| ||| | |||||| | ||| ||| || || | ||||| |||| Sbjct 259 ATCTT-AGTCTTGACATTGTCGATGGTGTCAGATTG-TTCAACATCTAAGGTGATGGTTT 316 Query 33719 TACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || || | || || |||||||||||||| Sbjct 317 TTCCAGTAAGAGTCTTAACAAAGATCTGCAT 347 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328266728355840