Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq108602 120 7e-22 seq44811 109 1e-18 seq97248 102 2e-16 seq87644 100 7e-16 seq19544 98.7 2e-15 seq56753 89.7 1e-12 seq14831 86.0 1e-11 >seq108602 Length=371 Score = 120 bits (132), Expect = 7e-22 Identities = 158/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || || || |||||||| ||||| || || || ||| |||||| Sbjct 344 CAGATCTTTGTTAAGACTCTTACTGGAAAAACCATCACCTTAGATGTTGAACAATCTGAC 285 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| ||||||||||| ||||| |||||| || ||| || Sbjct 284 ACCATCGACAATGTCAAGACTAAGATTCAAGATAAAGAGGGAATTCCACCAGACCAACAG 225 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 ||||||||||| || ||||| || || ||||| || || ||| | | ||||| ||| | Sbjct 224 AGACTTATCTTTGCTGGAAAACAATTAGAAGACGGTAGAACTCTATCAGATTATAACATT 165 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 206391 || ||||| |||||||| || | || | |||||| || Sbjct 164 CAAAAAGAATCTACTCTCCATTTGGTCCTCAGACTTAGA 126 >seq44811 Length=222 Score = 109 bits (120), Expect = 1e-18 Identities = 107/138 (78%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 |||||||| || |||||||||||| || || |||||||||||||| || |||||| Sbjct 189 AAGATTCAGGACAAAGAAGGAATTCCACCAGATCAACAAAGACTTATCTTTGCTGGAAAG 130 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 || |||||||| || || ||| | |||| |||||| | ||||| || |||||||| ||| Sbjct 129 CAATTGGAAGACGGTAGAACTCTCTCCGACTACAACATTCAGAAGGAATCTACTCTCCAC 70 Query 206374 CTTGTTTTGAGACTTCGA 206391 | || | |||||| || Sbjct 69 TTGGTCCTCAGACTTAGA 52 >seq97248 Length=461 Score = 102 bits (112), Expect = 2e-16 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||||||||| |||||||| || || || || ||| | |||||||| |||||| Sbjct 267 AAGATTCAAGACAAAGAAGGCATCCCACCAGATCAACAGAGATTGATCTTCGCTGGAAAG 326 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCA 206372 || || ||||||||||| || || | ||||||||| | ||||||||||| |||||||| Sbjct 327 CAATTAGAAGATGGAAGAACATTATCTGATTACAACATTCAGAAAGAGTCCACTCTTCA 385 >seq87644 Length=678 Score = 100 bits (110), Expect = 7e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 || |||||||| |||||||||||| || || |||||| | ||||| ||||||||| Sbjct 234 AAAATTCAAGATAAAGAAGGAATTCCTCCAGATCAACAAAGATTAATCTTTGCCGGAAAG 293 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 || || ||||||||||| || || | || ||||| | |||||||| ||||| ||||| Sbjct 294 CAATTAGAAGATGGAAGAACCTTATCTGACTACAATATTCAGAAAGAATCTACCCTTCAT 353 Query 206374 CTTGT 206378 || || Sbjct 354 CTCGT 358 >seq19544 Length=280 Score = 98.7 bits (108), Expect = 2e-15 Identities = 110/147 (75%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 |||||| ||||||||||| || ||||| || || || |||||| | ||||| Sbjct 201 GTAAAGACTAAGATTCAAGATAAGGAAGGTATCCCACCAGATCAACAAAGATTGATCTTT 142 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || |||||||| || ||||||||||| || || | |||||||| ||||||| ||||| Sbjct 141 GCAGGAAAGCAATTAGAAGATGGAAGAACCTTATCTGATTACAATATCCAGAAGGAGTCC 82 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCGA 206391 |||||||| | || | |||||| || Sbjct 81 ACTCTTCATTTGGTACTTAGACTTAGA 55 >seq56753 Length=203 Score = 89.7 bits (98), Expect = 1e-12 Identities = 96/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 206246 TAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCG 206305 ||||| ||||| ||||| ||||||||||||| || | ||| | ||| |||| | Sbjct 23 TAAAGACTAAGATCCAAGACAAAGAAGGAATTTCACCAAATCATCAGAAACTCCTCTTTG 82 Query 206306 CCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTA 206365 | ||||| || |||||||||||||| | || | ||||| ||| | ||||| || |||| Sbjct 83 CTGGAAAACAATTGGAAGATGGAAGAATCTTATCTGATTATAACATTCAGAAGGAATCTA 142 Query 206366 CTCTTCA 206372 ||||||| Sbjct 143 CTCTTCA 149 >seq14831 Length=294 Score = 86.0 bits (94), Expect = 1e-11 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 || |||||||| |||||||| || || ||| || ||||| ||||| || ||||| Sbjct 21 AAAATTCAAGACAAAGAAGGCATCCCTCCAGACCAACAGAGACTGATCTTTGCAGGAAAA 80 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 | ||||||||||| || || || || ||||| |||| |||||||||||| | ||| Sbjct 81 TGCCTTGAAGATGGAAGAACCTTAGCAGACTACAATATCCAAAAAGAGTCTACTATCCAC 140 Query 206374 CTTGT 206378 ||||| Sbjct 141 CTTGT 145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1180168011792992