Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_025429.1 Length=156446 Score E Sequences producing significant alignments: (Bits) Value seq59718 159 3e-34 seq15943 111 2e-19 seq60379 107 2e-18 seq19780 105 7e-18 >seq59718 Length=6799 Score = 159 bits (176), Expect = 3e-34 Identities = 372/555 (67%), Gaps = 26/555 (5%) Strand=Plus/Minus Query 142252 CAGATGCGTTTCAATCTGGCTCAAGGCTTTCCTCTTCTCTCCACGAAGAAGCTGCATCTG 142311 || |||||||| || || |||| ||||| | || | ||||| ||| |||| || Sbjct 2215 CAAATGCGTTTTGATTTGAACGAAGGTTTTCCGTGTATCACAACGAAAAAGTTGCA-CTT 2157 Query 142312 AAG-TCGATCATCGTCGAACTCCTGTGGTTCCTCAAAGGCGATACGAACATCAAGTATCT 142370 ||| ||||| || ||||||| | |||||| | ||||||| || |||||||||||||| Sbjct 2156 AAGATCGATTATTCACGAACTCTTATGGTTCTTGCAAGGCGACACCAACATCAAGTATCT 2097 Query 142371 TCACGATCACAACGTCAAGATCTGGGATGAATGGGCTGATGCCAATGGCAACCTCGGACC 142430 | || ||||||||||| || ||||| |||||||| |||| |||| ||||| || || Sbjct 2096 AAAAGAGCACAACGTCAAAATTTGGGACGAATGGGCGGATGAAGATGGGAACCTGGGTCC 2037 Query 142431 TGTCTACGGCAAGCAGTGGATGTCCTGGACGAACCTCGTTGTCGCTGGAGATGACGTCAC 142490 ||| ||||| | || |||| || ||| ||| | |||| ||| || Sbjct 2036 TGTTTACGGACACCAATGGAGATCTTGG-----CCT-------GATGGAAATGGCG---- 1993 Query 142491 AGACGAACCGATCGATCAGATCCGCCGGATCATTACTGACTTGAAGAAGTCTCCTCATTC 142550 | ||| || ||||| ||| | | || | || || || ||| |||| Sbjct 1992 ----GTACC-ATTGATCAAATCACGAAGTTGGTTGATTCATTAAAAAACAATCCGGATTC 1938 Query 142551 TCGTCGTCACATCGTCACCGCGTGGAACCCTGCTGAAGTCGACGACATGGCACTTCCTCC 142610 | | |||||||| | || |||||| ||| || || ||| ||||||| | || || Sbjct 1937 AAGAAGGCACATCGTTTCTGCTTGGAACGTTGCCGACGTTGACAACATGGCCTTACCGCC 1878 Query 142611 GTGTCACATGATGTTCCAATTCCACGTCGACTCGAAGAAGCGTCTGTCATGCCAGCTGTA 142670 ||||| ||||||||||| |||| | || || | | | | ||||| |||| Sbjct 1877 TTGTCATTCTTTGTTCCAATTCTACGTTG-CT-GACGGAAAAT-TAAGCTGCCAATTGTA 1821 Query 142671 TCAGCGTTCGGCAGACTGGTTCCTCGGCGTTCCGTTCAACATTGCTTCGTACGCGCTTCT 142730 || | || || ||| | |||||||| || |||||||| || ||||| | || Sbjct 1820 CCAAAGAAGCGCGGATACTTTCTTAGGCGTTCCATTTAACATTGCATCTTACGCATTGCT 1761 Query 142731 CACACAGCTCATTGCTCGCGAATGCGGTCTGGAACTCGGAGACTTCGTCCACACCTTCGG 142790 |||| | | |||| | | ||||| | ||||| | || |||||||| || |||||||| Sbjct 1760 CACAATGATGCTTGCACAAGTATGCGATTTGGAATTGGGCGACTTCGTTCATACCTTCGG 1701 Query 142791 CAATTCGCACATCTA 142805 || | ||||| || Sbjct 1700 TGATGCACACATTTA 1686 >seq15943 Length=290 Score = 111 bits (122), Expect = 2e-19 Identities = 116/150 (77%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 148861 GAAGAAGAGAAGAAGACGATCGGCGATGACATCAAGGACGTCTACGGCGATGCCAAAGGA 148920 |||||||| |||||| | |||| || |||||||||||| ||||| || || ||||| Sbjct 233 GAAGAAGAAAAGAAGGCAATCGCCGCTGACATCAAGGAAGTCTATGGTGAAGCCAAGTCC 174 Query 148921 AATGGCTTCGACACCAAGATCTTGAAGAAGGTCATCAACATCCGCAAGAAGGATGAGC-A 148979 || || ||||||||||||||| || ||||||| ||| | | ||||||||||| ||| Sbjct 173 AACGGTTTCGACACCAAGATCATGCGGAAGGTCGTCAGCCTTCGCAAGAAGGA-CAGCGC 115 Query 148980 GGAGCGCATGGAAGAGGAAGCAATCCTCGA 149009 ||||||| ||| || || || || || || Sbjct 114 GGAGCGCCAGGAGGAAGAGGCCATTCTTGA 85 >seq60379 Length=4852 Score = 107 bits (118), Expect = 2e-18 Identities = 327/505 (65%), Gaps = 28/505 (6%) Strand=Plus/Minus Query 142243 TTCGGTCATCAGATGCGTTTCAATCTGGCTCAAGGCTTTCCTCTTCTCTCCACGAAGAAG 142302 || || ||||||||||||||| || || |||| ||||| || | | ||||| ||| Sbjct 1975 TTTGGCCATCAGATGCGTTTCGATTTGAGCGAAGGTTTTCCGCTCGTGACAACGAAAAAG 1916 Query 142303 CTGCATCTGAAGTCGATCATCGTCGAACTCCTGTGGTTCCTCAAAGGCGATACGAACATC 142362 || ||| || |||||| ||| |||| || | |||||||| |||||||| || || Sbjct 1915 CTTCATTTGCGGTCGATTATCATCGAGCTTTTATGGTTCCTGCGCGGCGATACCAATATT 1856 Query 142363 AAGTATCTTCACGATCACAACGTCAAGATCTGGGATGAATGGGCTGATGCCAATGGCAAC 142422 | || | || | ||| ||| |||||||| ||||| |||| |||||| | Sbjct 1855 GGCTGGCTCAAAGAAAATGGCGTGTCGATTTGGGATGATTGGGCCGATGAAAATGGCGAT 1796 Query 142423 CTCGGACCTGTCTACGGCAAGCAGTGGATGTCCTGGACGAACCTCGTTGTCGCTGGAGAT 142482 || ||||| || ||||| | |||||| || ||| | || |||| Sbjct 1795 CTTGGACCGGTATACGGATATCAGTGGCGCTCATGGCC------------AGCGCCAGAT 1748 Query 142483 GACGTCACAGACGAACCGATCGATCAGATCCGCCGGATCATTACTGACTTGAAGAAGTCT 142542 | || || | |||||||||| | || || | ||||| | Sbjct 1747 G--------GAACAAGTG-TCGATCAGATTGAAAAACTTGTTGATGGTATCAAGAACAAT 1697 Query 142543 CCTCATTCTCGTCGTCACATCGTCACCGCGTGGAACCCTGCTGAAGTCGACGACATGGCA 142602 || |||| || || ||||| || | || |||||||||||| || ||||| ||||| Sbjct 1696 CCGAATTCGCGCCGCCACATTGTGAGTGCTTGGAACCCTGCTCTGGTAGACGAGATGGCT 1637 Query 142603 CTTCCTCCGTGTCACATGATGTTCCAATTCCACGTCGACTCGAAG--AAGCGTCTGTCAT 142660 | || || ||||| |||| || || | |||| || | ||| || |||| Sbjct 1636 TTGCCGCCATGTCATTGTCTGTTTCAGTTTTATGTCG--CGGACGGCAAG---CTTTCAT 1582 Query 142661 GCCAGCTGTATCAGCGTTCGGCAGACTGGTTCCTCGGCGTTCCGTTCAACATTGCTTCGT 142720 ||||||| |||||||||||||| || || | || || || ||||| || || || | Sbjct 1581 GCCAGCTCTATCAGCGTTCGGCGGATATCTTTTTAGGTGTGCCATTCAATATCGCGTCCT 1522 Query 142721 ACGCGCTTCTCACACAGCTCATTGC 142745 | |||||||| || || | ||||| Sbjct 1521 ATGCGCTTCTTACGCACATGATTGC 1497 >seq19780 Length=279 Score = 105 bits (116), Expect = 7e-18 Identities = 124/168 (74%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 142294 ACGAAGAAGCTGCATCTGAAGTCGATCATCGTCGAACTCCTGTGGTTCCTCAAAGGCGAT 142353 |||||||| ||||| || || |||||| | ||| | ||||||||||| |||||| Sbjct 269 ACGAAGAAACTGCACCTTCGCTCCATCATCATTGAATTGCTGTGGTTCCTGCGCGGCGAT 210 Query 142354 ACGAACATCAAGTATCTTCACGATCACAACGTCAAGATCTGGGATGAATGGGCTGATGCC 142413 || |||||||||| || | || |||| || | ||||||| |||||||||| |||| Sbjct 209 ACCAACATCAAGTGGCTGAATGAGAACAAGGTGACGATCTGGAATGAATGGGCAGATGAG 150 Query 142414 AATGGCAACCTCGGACCTGTCTACGGCAAGCAGTGGATGTCCTGGACG 142461 || || | ||||| || ||||| || | |||||| ||| ||| || Sbjct 149 AACGGTGATCTCGGCCCGGTCTATGGTCACCAGTGGCGGTCATGGCCG 102 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499816318891520