Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_025447.1 Length=348532 Score E Sequences producing significant alignments: (Bits) Value seq60421 105 1e-17 seq39816 95.1 3e-14 >seq60421 Length=4773 Score = 105 bits (116), Expect = 1e-17 Identities = 307/465 (66%), Gaps = 16/465 (3%) Strand=Plus/Plus Query 298831 AAGGCAAACTAGATCCTATGATTGGTCGCCAGAAAGA-ATTGTCTGCATTGATTGAGACT 298889 ||||||| || || || | ||||||||| | | || ||| | | | | ||| ||| | Sbjct 824 AAGGCAAGCTCGACCCGGTTATTGGTCGCGACGACGAGATTCGCCGAACT-ATTCAGA-T 881 Query 298890 CTTGCT-CGCAAAACCAAAAAGAATGCTATTCTCACTGGTGAAGCTGGTGTAGGTAAAAC 298948 || | ||| ||| ||||| ||| || | ||| ||| ||| | || || |||||||| Sbjct 882 ATTACAGCGCCGAACTAAAAACAATCCTGTGATCATTGGCGAACCGGGCGTTGGTAAAAC 941 Query 298949 ACAAATCATCGACGGGCTTGCACAAGCTATTGCTGATGGTAACGTACCTGAACACCTGAA 299008 || | || || || || ||| || | | ||||| | || || || | | || Sbjct 942 CGCGATTGTAGAAGGCCTCGCTCAACGCATCGTTAATGGTGAAGTGCCAGAGGGCATTAA 1001 Query 299009 AGACGTTGAAATTCTTT---CACTAAATGTTGGTGCATTGACTGCTGGTACTAAGTATCG 299065 | | || |||| |||| | ||||||| |||| ||| ||| |||| | || Sbjct 1002 GAA---TAAACGCCTTTTGTCACTCGACCTTGGTGCCTTGATTGCCGGTGCTAAATTCCG 1058 Query 299066 TGGTGAATTTGAAGAACGCATCGACAATTTGCTAAAAGAACTAAAGAAACGTGAAAAT-- 299123 |||||| || ||||| ||| || | || ||||||| || ||||| ||| | Sbjct 1059 TGGTGAGTTCGAAGAGCGCCTCAAGGCGGTGTTAAAAGATCTGTCGAAACAAGAAGGTCA 1118 Query 299124 -ACTATTGTTTTCATTGATGAAATTCATATTATGGTTGGGGCTGGTTCCGCAAGTAATGG 299182 | ||| | || |||||||| ||||| | ||||||||| || ||| || |||| Sbjct 1119 GATCATTCTGTTTATTGATGAGATTCACACTATGGTTGGTGCGGGTAAGGCGG---ATGG 1175 Query 299183 TTCTATGGACATGAGCAATATGCTTAAGCCAGCACTTTCACGTGGTGAGATTCGTGTAAT 299242 | |||||| | |||||||| ||||||||| | | |||||||| | | | | Sbjct 1176 CGCGATGGACGCCGGTAATATGCTCAAGCCAGCATTGGCGCGTGGTGAACTGCATTGTGT 1235 Query 299243 TGGTGCAACAACATATGATGAATATCGTAAAAATATCGAGAAAGA 299287 |||||| || || | | |||||||| | ||||||||||||| Sbjct 1236 TGGTGCCACTACGCTTAACGAATATCGACAGTATATCGAGAAAGA 1280 >seq39816 Length=231 Score = 95.1 bits (104), Expect = 3e-14 Identities = 72/85 (85%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 73496 AGTGGCAGAGTGGTTTAATGCAACGGTCTTGAAAACCGTCGAGGGTGAAAGTCCTCCGTG 73555 |||||||||||||| |||||| ||||||||||||||| || |||||||||| ||||| Sbjct 28 AGTGGCAGAGTGGTCGAATGCACCGGTCTTGAAAACCGACGTAGGTGAAAGTCTACCGTG 87 Query 73556 AGTTCAAATCTCACCTTCACCGCCA 73580 |||| |||| ||||| | |||||| Sbjct 88 GGTTCGAATCCCACCTCCTCCGCCA 112 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1113611621925088