Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_025462.1 Length=99730 Score E Sequences producing significant alignments: (Bits) Value seq98856 104 1e-17 seq77519 95.1 8e-15 >seq98856 Length=458 Score = 104 bits (114), Expect = 1e-17 Identities = 146/204 (72%), Gaps = 11/204 (5%) Strand=Plus/Plus Query 19925 GAGATTAAAACAAACCCAACATCACGAAGATTAATTGTATCAGGTTGGAATCCTCATGAT 19984 || |||||||| ||||| ||||| | ||||| || || | ||||||||| | ||| Sbjct 77 GACATTAAAACCAACCCGGATTCACGGCGCTTAATAGTCTCGGCCTGGAATCCTAAAGAT 136 Query 19985 GTTGCAG--ATG--------TAGATTTACCACCTTGCCATACACTATTTCAATTCTTTGT 20034 || | | ||| | |||| || ||||||||||| || ||||| |||| || Sbjct 137 ATTCCGGTGATGGCAAAGTCTGGATTG-CCTCCTTGCCATACGCTGTTTCAGTTCTACGT 195 Query 20035 GAAAGATGGTAAATTATCTTGCCAGTTGTATCAACGAAGTGCTGACTTATTACTTGGTGT 20094 | || || ||||| |||||| |||| ||| ||||||| || ||||| | ||||| Sbjct 196 TACGGAAGGGCGTTTATCGTGCCAGCTGTACCAAAGAAGTGCGGATGTATTATTAGGTGT 255 Query 20095 TCCATTTAATATTGCATCTTATGC 20118 |||||||| ||||||||||| || Sbjct 256 GCCATTTAACATTGCATCTTACGC 279 >seq77519 Length=1156 Score = 95.1 bits (104), Expect = 8e-15 Identities = 146/209 (70%), Gaps = 12/209 (6%) Strand=Plus/Plus Query 19913 TGGGTTATTAATGAGATTAAAACAAACCCAACATCACGAAGATTAATTGTATCAGGTTGG 19972 ||||||||||| ||||||||||| ||||| | || | | |||| ||||| | ||| Sbjct 668 TGGGTTATTAACGAGATTAAAACCAACCCTAGCTCTAGGCGTCTAATCGTATCGGCATGG 727 Query 19973 AATCCTCATGATGTTGCAGATGTAGA---------TTTACCACCTTGCCATACACTATTT 20023 || ||| || | | ||| | | |||||| || |||||||| |||| Sbjct 728 AACCCTGGCGAGATAGAAGAAATGGCCAAAGCCGGTTTACCGCCGTGCCATACCTTATTC 787 Query 20024 CAATTCTTTGTGA---AAGATGGTAAATTATCTTGCCAGTTGTATCAACGAAGTGCTGAC 20080 ||||| | |||| | ||| ||| | ||||||||||||||||||||||||||| Sbjct 788 CAATTTTATGTGTCGCACGATAAAAAACTGAGTTGCCAGTTGTATCAACGAAGTGCTGAT 847 Query 20081 TTATTACTTGGTGTTCCATTTAATATTGC 20109 ||||| | || || || ||||| ||||| Sbjct 848 TTATTCTTGGGCGTACCGTTTAACATTGC 876 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318586822590752