Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_025830.1 Length=120938 Score E Sequences producing significant alignments: (Bits) Value seq47669 86.0 5e-12 seq9867 82.4 6e-11 >seq47669 Length=217 Score = 86.0 bits (94), Expect = 5e-12 Identities = 120/166 (72%), Gaps = 8/166 (5%) Strand=Plus/Minus Query 38043 GCCATGGAATTGATGGTTAGGTCTCTACGTGCCAAATCCTCTTCCAGAGTTACATCTGG- 38101 || |||| ||| || || || ||||| || | ||||| | || | ||| ||| |||| Sbjct 172 GCGATGGCATTAATAGTGAGATCTCTGCGGGATAAATCTTGCTCTAAAGTAACA-CTGGT 114 Query 38102 ---ACTAAAGCATACCTCAAATCCTTTATGGCCTTCACCTGTTTTTCTTTCTGTGCGTGC 38158 | |||| | |||||||||||||| ||| |||| | ||||| || ||||| || Sbjct 113 ATCAGTAAAAAA---CTCAAATCCTTTATAACCTACACCAGATTTTCGCTCAGTGCGGGC 57 Query 38159 AAGAGCGTACTCTTCTCTTGTTTCTGGGTGAAGATAAACTGGAAAA 38204 ||| || || |||||| | ||||| ||||||||| | || || ||| Sbjct 56 AAGGGCATATTCTTCTTTGGTTTCAGGGTGAAGAAAGACGGGGAAA 11 >seq9867 Length=315 Score = 82.4 bits (90), Expect = 6e-11 Identities = 65/77 (84%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 9584 TGGTGGCCCCTGCTGGACTTGAACCAGCGACCAAGCGATTATGAGTCACCTGCTCTAACC 9643 |||||| ||| | ||||||||||| ||||||| |||||||||||| ||||||||||| Sbjct 107 TGGTGGGCCCAGAAGGACTTGAACCTTCGACCAATCGATTATGAGTCGACTGCTCTAACC 166 Query 9644 A-CTGAGCTAAGGGGCC 9659 | |||||||| ||| || Sbjct 167 AGCTGAGCTATGGGCCC 183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 386362141661728