Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq94139 107 2e-18 seq19544 102 7e-17 seq108602 91.5 1e-13 seq87644 82.4 7e-11 >seq94139 Length=510 Score = 107 bits (118), Expect = 2e-18 Identities = 179/255 (70%), Gaps = 3/255 (1%) Strand=Plus/Minus Query 25149 ATATAAGTAGTTTTCA-ATTAAACAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAA 25207 |||||| || ||| | | ||| ||| |||||||| ||||||||||| |||| || ||| Sbjct 369 ATATAATTAATTTAAACAATAAGCAAAATGCAAGTATTTGTAAAAACTCTAACAGGTAAA 310 Query 25208 TCGATCACGATCGAAGTCGAAGCCAACGATACTATCGAGCAAGTAAAACAAAAAATTACC 25267 | ||||| |||| || ||| |||||| |||| || | | ||| |||||| Sbjct 309 ACTATCACAGTCGATGTTGAACACAACGAATCTATTGATAACATCAAAGCCAAAATTCAG 250 Query 25268 GATAAAGAGGGTATACCGCCCGATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAA 25327 || || || ||||| || | ||| |||||| | ||| || || || ||| | ||| Sbjct 249 GAAAAGGAAGGTATCCCAGCTGATAGCCAAAGATTAGTTTTTGGTGGAAAGCAATTGGAA 190 Query 25328 GATGATAGAAATGTCAGC-GATTACAATATTCAAAAAGAATCCACCATTCATTTAGTGTT 25386 |||| |||| | | || |||||||||||| |||||| || ||||| || || | Sbjct 189 GATGGAAGAACAG-CTGCAGATTACAATATTAGAAAAGAGTCTACCATCTTCTTGGTTCT 131 Query 25387 AAGATTGAGAGGAGG 25401 ||| | |||||||| Sbjct 130 CAGAATTAGAGGAGG 116 >seq19544 Length=280 Score = 102 bits (112), Expect = 7e-17 Identities = 164/234 (70%), Gaps = 4/234 (2%) Strand=Plus/Minus Query 25172 AACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCC 25231 || ||||| | |||||||| || || || ||||| | || || | || |||||| | Sbjct 279 AATATGCAGATCTTTGTAAAGACCTTGACTGGAAAGACCATTACCCTTGACGTCGAA--C 222 Query 25232 AA--CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCG 25289 || ||||||||| || | ||||| || ||| ||||| || ||||| || || | Sbjct 221 AATCCGATACTATTGATAATGTAAAGACTAAGATTCAAGATAAGGAAGGTATCCCACCAG 162 Query 25290 ATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATT 25349 |||| |||||| | || | | || || ||| | ||||||| |||| | |||| Sbjct 161 ATCAACAAAGATTGATCTTTGCAGGAAAGCAATTAGAAGATGGAAGAACCTTATCTGATT 102 Query 25350 ACAATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAA 25403 ||||||| || || || ||||| ||||||| || | ||| | |||||||||| Sbjct 101 ACAATATCCAGAAGGAGTCCACTCTTCATTTGGTACTTAGACTTAGAGGAGGAA 48 >seq108602 Length=371 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||| || || | || |||||| | ||||| | || || ||| | | | Sbjct 347 ATGCAGATCTTTGTTAAGACTCTTACTGGAAAAACCATCACCTTAGATGTTGAA-CAATC 289 Query 25235 -GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 || || ||||| | || || || ||| ||||||||||| || || || || || Sbjct 288 TGACACCATCGACAATGTCAAGACTAAGATTCAAGATAAAGAGGGAATTCCACCAGACCA 229 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 || ||||| || | | || |||||| | ||||| | ||||| | | ||||| || Sbjct 228 ACAGAGACTTATCTTTGCTGGAAAACAATTAGAAGACGGTAGAACTCTATCAGATTATAA 169 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGA 25402 |||||||||||||| || | ||||| || | ||| | ||||||||| Sbjct 168 CATTCAAAAAGAATCTACTCTCCATTTGGTCCTCAGACTTAGAGGAGGA 120 >seq87644 Length=678 Score = 82.4 bits (90), Expect = 7e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 25259 AAAATTACCGATAAAGAGGGTATACCGCCCGATCAGCAAAGACTCATTTACGGCGGCAAA 25318 |||||| |||||||| || || || || ||||| |||||| | || | | ||| || Sbjct 234 AAAATTCAAGATAAAGAAGGAATTCCTCCAGATCAACAAAGATTAATCTTTGCCGGAAAG 293 Query 25319 CAACTCGAAGATGATAGAAATGTCAGCGATTACAATATTCAAAAAGAATCCACCATTCAT 25378 ||| | ||||||| |||| | || ||||||||||| |||||||| ||| ||||| Sbjct 294 CAATTAGAAGATGGAAGAACCTTATCTGACTACAATATTCAGAAAGAATCTACCCTTCAT 353 Query 25379 TTAGTGTTAAGATTGAGAGGAGG 25401 | || | ||||| ||||| || Sbjct 354 CTCGTCCTCAGATTAAGAGGTGG 376 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 444487113200640