Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq11155 104 3e-16 seq3443 91.5 2e-12 >seq11155 Length=310 Score = 104 bits (114), Expect = 3e-16 Identities = 188/275 (68%), Gaps = 0/275 (0%) Strand=Plus/Plus Query 2133560 CGAGATGGTGACGGTGCGCGATATTGACTTTTTCTCCATGTGCGAGCACCACCTGCTGCC 2133619 ||||||| | ||| | |||||||| | | ||| ||||||| |||||| | ||||| Sbjct 11 CGAGATGATCCTGGTACAGGATATTGAGCTGTACTCACTGTGCGAACACCACGTACTGCC 70 Query 2133620 CTTTATCGGCAAGGCCCACGTGGGCTACCTGCCCGCGGGCAAGATCATCGGTCTGAGCAA 2133679 ||| ||||||||| ||| |||| |||| | || | |||||| | |||||||| ||| Sbjct 71 CTTCATCGGCAAGTGCCATGTGGCCTACATTCCTACCGGCAAGGTGCTCGGTCTGTCCAA 130 Query 2133680 GATCCCGCGCATCGTCGACATGTTTTCCGACCGCTTCCAAGTACAGGAGGCACTCACGCG 2133739 | | |||||||||| ||| | || | || | || | ||||| ||||| || Sbjct 131 GGTGGCGCGCATCGTTGACGTCTTCGCAAGGCGACTGCAGATTCAGGAAGCACTGACTGC 190 Query 2133740 CCAGATCGCCGAGAGCGTGAGCCAGGTTACGGGCGCGCGCGGCGTCGGCGTCGTCCTCGA 2133799 |||||| || || | || | | || || ||| || || |||||| || | || Sbjct 191 CCAGATTGCAGAAACTGTCATGGAAGTCACTAACGCCGAAGGTGTGGGCGTCATCATTGA 250 Query 2133800 GGGCCTGCACATGTGCGTGTGTATGCGCGGCGTGC 2133834 | | ||| ||||| || ||||||||||||| Sbjct 251 AGCACAGCATATGTGTATGATGATGCGCGGCGTGC 285 >seq3443 Length=346 Score = 91.5 bits (100), Expect = 2e-12 Identities = 202/303 (67%), Gaps = 0/303 (0%) Strand=Plus/Plus Query 259883 ACCTACGAGGCCATGTCGCAGCAGTTGTTCACCTCAGCGACGCCCACGCTCTTTAATGCC 259942 ||||| ||| ||||| | ||| || ||| || || || || | |||||| | Sbjct 11 ACCTATGAGTTGATGTCCAAAAAGTATTTTACCCACGCTACACCTACCTTGTTTAATTCG 70 Query 259943 GGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATC 260002 || || || || || | || || || || || |||| ||||||| |||| || Sbjct 71 GGTACCCCTAAACCTCAAATGTCCTCTTGTTTCCTTTTGGCAATGAAGGACGATAGTATT 130 Query 260003 GAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATC 260062 || || || ||||| ||||| || || || || || | | || ||||| || Sbjct 131 GATGGTATTTATGATACGCTAAAACAAACGGCAAAAATTTCACAATCTGCTGGCGGGATA 190 Query 260063 GGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAG 260122 ||| || || |||||| || || ||| | || | || | || || ||||| || Sbjct 191 GGTCTTTCCATACACAATGTACGGGCCACAGGTTCTTATATCGCAGGTACCAATGGGACT 250 Query 260123 TCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACCAG 260182 ||||| || ||||||||||||| | ||||||||||| || ||||| ||||| || ||| Sbjct 251 TCCAATGGTATTGTGCCCATGCTGCAGGTTTTTAACGATACTGCGCGTTACGTAGATCAG 310 Query 260183 TGC 260185 || Sbjct 311 GGC 313 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7167283288978624