Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_026927.1 Length=228143 Score E Sequences producing significant alignments: (Bits) Value seq59179 176 7e-39 seq12128 150 3e-31 seq64606 122 1e-22 seq45200 89.7 7e-13 >seq59179 Length=18447 Score = 176 bits (194), Expect = 7e-39 Identities = 491/744 (66%), Gaps = 17/744 (2%) Strand=Plus/Minus Query 161168 CCTGATGAGATCTACAACCTAGGGGCACAGAGTCATGTGAAAGTATCTTTCGAGGAACCT 161227 || |||||| | || || | | ||||| ||||||||| || || ||||| || ||| Sbjct 16942 CCCGATGAGGTTTATAATTTGGCTGCACAAAGTCATGTGGCGGTTTCATTCGAAGAGCCT 16883 Query 161228 GAATATACAGCACAGACTGATGCTCTGGGAACCCTAAGAGTATTGGAGGCAGTTCGTCTC 161287 |||||||| || | |||| ||||| || || | | | | || || | || | Sbjct 16882 GAATATACGGCTAACTCTGACGCTCTTGGCACGTTGCGTTTGCTCGAAGCTATCCGAATT 16823 Query 161288 CTAGGTATGACAGATAGGGTCCGTAT-CTACCAGGCATCCACCAGTGAGTTGTATGGGTT 161346 ||||| | || | || || ||| || || || ||| ||| ||||||||||| Sbjct 16822 CTAGGACTTGGGGAAACA-TCAAAATTCTATCAAGCCTCAACCTCTGAATTGTATGGGTT 16764 Query 161347 GGTACAAGAGACACCACAGAAAGAAACAACACCTTTCTACCCACGATCTCCATATGGCGT 161406 ||| ||||| || || || || ||||||||||| || || || || ||| |||| || Sbjct 16763 GGTGCAAGAAACTCCTCAAAAGGAAACAACACCATTTTATCCGCGCAGTCCCTATGCGGT 16704 Query 161407 AGCTAAACTCTATGGATATTGGATTGTAAAGAACTACAGAGAGAGTTATGGGATGCACGC 161466 || ||| | |||| || |||||| | || ||| | || |||||| || |||| Sbjct 16703 TGCAAAAATGTATGCCTACTGGATTACAGTTAATTACCGCGAAGCCTATGGGTTGTACGC 16644 Query 161467 CAGTAGTGGTATTCTATTCAACCATGAGTCACCACGACGGGGTGAGACTTTCGTAACCCG 161526 ||| |||||| || ||||||||||| || || | || || ||||| || || || | Sbjct 16643 GTGTAATGGTATCCTGTTCAACCATGAATCGCCTCTGCGCGGCGAGACATTTGTGACTAG 16584 Query 161527 TAAGATTACTAGGGGACTATCCCGTAT-TAGTACAGGACTACAGGATTGTCTATACCTAG 161585 || || || || | || | || || || | || | | ||| || || | Sbjct 16583 AAAAATCACAAGAGCGCTCGCACGGATCAAGCTTGGTACACAAAAACTGT-TAAGTCTCG 16525 Query 161586 GTAATCTAAACTCAAGACGAGATTGGGGTCATGCTGAAGACTATGTGGAGGCTATGTGGT 161645 | ||| || | | |||||||||||| || || || || || ||| ||||| Sbjct 16524 GGAATTTATCGGCCAAACGAGATTGGGGGCACGCACGCGATTACGTAGAGATGCAGTGGT 16465 Query 161646 TGATGTTACAACAGGAAACTCCTGATGACTATGTGATTGCCACAGGTAAAGAGTATTCAG 161705 | ||| | |||||||| ||||| || | ||| ||||| |||||| ||||||| | Sbjct 16464 TAATGCTTCAACAGGATGTCCCTGAAGATTTTGTTATTGCTACAGGTGTGCAGTATTCCG 16405 Query 161706 TGAAGGACTTTGTAGAGGCATCTGCTGAATACTTTGGTATGAAGATTGAGTGGCAGGGTG 161765 | || ||||| | ||| | ||| || | || | ||||| ||| ||| | ||| Sbjct 16404 TTCGTGATTTTGTTAATGCAGCGGCTAAAGAATTGGACATGAAAATTACTTGGGAAGGTC 16345 Query 161766 AAGGATTGGATGAAGTGGGTATAGAT-AG-ATTTACAAAGAAGGTTGTCGTTCGTGTGAG 161823 | || | | |||||||||| | | || || ||||| | |||| |||| Sbjct 16344 ACGGCGAGAACGAAGTGGGTAGACTTGAGAATGGACAAA-----TCATCGTCAATGTG-- 16292 Query 161824 TGAC---AAATACTTCAGACCAGCAGAGGTTGAAACTCTCTGGGGTGATCCCACTAAGGC 161880 ||| || ||||| |||||||||||||||||||||| ||| || | |||||||| Sbjct 16291 -GACCCTCGGTATTTCAGGCCAGCAGAGGTTGAAACTCTCTTGGGGGACGCTACTAAGGC 16233 Query 161881 TAAAGAGGTATTGGGTTGGAAACC 161904 ||||| | | ||||||| ||| Sbjct 16232 CAAAGAAAAACTTGGTTGGACACC 16209 >seq12128 Length=306 Score = 150 bits (166), Expect = 3e-31 Identities = 179/243 (74%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 161348 GTACAAGAGACACCACAGAAAGAAACAACACCTTTCTACCCACGATCTCCATATGGCGTA 161407 || ||||||| || || | ||||||||| ||||| ||||| || || || |||| || Sbjct 45 GTCCAAGAGATCCCTCAAACAGAAACAACGCCTTTTTACCCTCGGTCACCCTATGCTGTG 104 Query 161408 GCTAAACTCTATGGATATTGGATTGTAAAGAACTACAGAGAGAGTTATGGGATGCACGCC 161467 || ||| | |||| |||||||||||| |||||| ||||| |||||| || ||||| Sbjct 105 GCAAAAATGTATGCTTATTGGATTGTAGTGAACTATCGAGAGGCTTATGGAATTTACGCC 164 Query 161468 AGTAGTGGTATTCTATTCAACCATGAGTCACCACGACGGGGTGAGACTTTCGTAACCCGT 161527 ||| |||||| | || ||||||||||| || || || ||||| || || |||||||| Sbjct 165 TGTAACGGTATTTTGTTTAACCATGAGTCTCCGCGTCGAGGTGAAACATTTGTAACCCGG 224 Query 161528 AAGATTACTAGGGGACTATCCCGTATTAGTACAGGACTACAGGATTGTCTATACCTAGGT 161587 || || || | | || || ||| ||| ||| | || ||||| || ||||| ||| Sbjct 225 AAAATCACCCGTGCTCTGGCCAATATCGGTATGGGAATTCAAGATTGCCTCTACCTTGGT 284 Query 161588 AAT 161590 ||| Sbjct 285 AAT 287 >seq64606 Length=2588 Score = 122 bits (134), Expect = 1e-22 Identities = 468/727 (64%), Gaps = 16/727 (2%) Strand=Plus/Plus Query 160970 ATCTCTGGTATAACTGGGCAGGATGGATCCTATCTTGCTGAACTTCTACTGAAGAAGGGG 161029 ||| |||| | || || || || || || ||| | || ||||| || || |||| || Sbjct 1562 ATCACTGGAGTGACAGGACAAGACGGTTCTTATTTAGCAGAACTCCTGCTAGAGAAAGGA 1621 Query 161030 TATGAAGTCCATGGTATTATTCGTAGAACCTCCTCGTTTAATACAGGAAGAATCGATCAT 161089 |||||||| ||||| ||| || ||| |||| || || || || | ||| |||||||| Sbjct 1622 TATGAAGTTCATGGAGTTAAGCGAAGAGCCTCTTCATTCAACACCGAAAGGGTCGATCAT 1681 Query 161090 ATCT--TCGA-TC---AGTTACACCTCCACTACGGGGATTTGACTGACTCCCTGAACATA 161143 | | |||| || | || | | |||||||| || ||||||| || ||||| | Sbjct 1682 TTGTATTCGAATCCAAATTTCAAATTGCACTACGGCGACCTGACTGATTCTGTGAACCTC 1741 Query 161144 GTCTCTATCATTAAGGAAGTAGAACCTGATGAGATCTACAACCTAGGGGCACAGAGTCAT 161203 | ||||| | |||||| | || |||| || ||||||||||| || | || Sbjct 1742 ATTAAAATCATCAGCGAAGTACAGCCCCATGAAATTTACAACCTAGGCGCTATGTCGCAC 1801 Query 161204 GTGAAAGTATCTTTCGAGGAACCTGAATATACAGCACAGACTGATGCTCTGGGAACCCTA 161263 || ||||| || || || |||||||| ||| || | |||| | || || Sbjct 1802 GTTAAAGTTTCGTTTGATATTCCTGAATACACAACAAATGTGGATGGCGTAGGCGTTTTA 1861 Query 161264 AGAGTATTGGAGGCAGTTCGTCTCCTAGGTATGACAGATAGGGTCCGTATCTACCAGGCA 161323 || | | || || ||||| | | ||||| ||| ||| || | || || Sbjct 1862 CGACTGCTCGAAGCCGTTCGGATATTGAAGATGACCGATTCAGTCAAAATATTTCAAGCC 1921 Query 161324 TCCACCAGTGAGTTGTATGGGTTGGTACAAGAGACACCACAGAAAGAAACAACACCTTTC 161383 || ||| ||| | | || || ||||| || || || |||| ||||| || Sbjct 1922 TCGACCTCTGAACTTTTCGGTAAAGTTCAAGAAGAACGGCAAAATGAAAACACACCCTTT 1981 Query 161384 TACCCACGATCTCCATATGGCGTAGCTAAACTCTATGGATATTGGATTGTAAAGAACTAC 161443 | || || ||| ||||| || || ||||| || || | |||||| | || ||| Sbjct 1982 CATCCGCGGAGTCCGTATGGAGTTGCGAAACTTTACGGCTTTTGGATCATGCGAAATTAC 2041 Query 161444 AGAGAGAGTTATGGGATGCACGCCAGTAGTGGTATTCTATTCAACCATG--AGTCACCAC 161501 | ||| ||||| ||| | | | | ||| ||| |||||||||||| ||| || Sbjct 2042 AAAGAAGCGTATGGCATGTTCAACTGCAATGGAATTTTATTCAACCATGCCAGT--CCGA 2099 Query 161502 GACGGGGTGAGACTTTCGTAACCCGTAAGATTACTAGGGGACTATCCCGTATTAGTACAG 161561 || |||| || || || || || || || || || | || | || |||| | | Sbjct 2100 GAAGGGGAGAAACGTTTGTGACGCGGAAAATCACAATGGCCGTTGCCAATATTCATCTCG 2159 Query 161562 GACTACAGGATTGT---CTATACCTAGGTAATCTAAACTCAAGACGAGATTGGGGTCATG 161618 | || || | || || || |||||||| || ||| || || ||||| || | Sbjct 2160 G--TA-AGCAAAGTAAATTAATGCTTGGTAATCTTGACGCAATGCGCGACTGGGGACACG 2216 Query 161619 CTGAAGACTATGTGGAGGCTATGTGGTTGATGTTACAACAGGAAACTCCTGATGACTATG 161678 || |||| ||||| | | || ||||||||||| ||||| ||||| || || || || | Sbjct 2217 CTAAAGATTATGTCTACGGAATTTGGTTGATGTTGCAACAAGAAACCCCAGACGATTACG 2276 Query 161679 TGATTGC 161685 | |||| Sbjct 2277 TACTTGC 2283 >seq45200 Length=220 Score = 89.7 bits (98), Expect = 7e-13 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 160963 AGCTTTAATCTCTGGTATAACTGGGCAGGATGGATCCTATCTTGCTGAACTTCTACTGAA 161022 ||||||||| | ||| |||| || || ||||| ||||| || || ||||| ||||| | Sbjct 214 AGCTTTAATTACAGGTGTAACCGGCCAAGATGGTTCCTACCTAGCAGAACTATTACTGGA 155 Query 161023 GAAGGGGTATGAAGTCCATGGTATTATTCGTAGAACCTCCTCGTTTAATACAGGAAGAAT 161082 || || ||||||||||| ||||||| ||| | | | || || ||||||| | || Sbjct 154 AAAAGGTTATGAAGTCCACGGTATTAAGCGTCGGGCGGCATCTTTAAATACAGACCGGAT 95 Query 161083 CGATCATAT 161091 ||||||||| Sbjct 94 CGATCATAT 86 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 728933684053760