Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_027204.1 Length=194701 Score E Sequences producing significant alignments: (Bits) Value seq34388 86.0 8e-12 >seq34388 Length=241 Score = 86.0 bits (94), Expect = 8e-12 Identities = 149/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 176401 CCTGATCGAAGTGATTGTTATAGATGTGGGTATCACCAAGGTTGCCGATCAGTTCCCCGA 176460 |||| || | ||| || ||||||||||| |||||| || || ||| | || ||| Sbjct 222 CCTGTTCAAGGTGGTTTGAATAGATGTGGGCATCACCCAGCGTGTGGATGAACTCGCCGG 163 Query 176461 CTTCCAAGCCGCATTCCAGCGCGATCAGATGTGTCAGGAGTGCGTAAGAGGCGATGTTGA 176520 | | | ||| | | || | || |||||||| | |||||| || ||||| |||| Sbjct 162 CCTTGAGGCCTGTGACATGGGCCACCATGTGTGTCAGCAATGCGTAGGAAGCGATATTGA 103 Query 176521 ATGGAAGCCCCAAGAAGACGTCCACGGACCGCTGATTCCAAAGGCAGGACAGTTTCCCGT 176580 | |||| |||| ||||| || | || ||||||| | | |||| ||||| | |||| Sbjct 102 AGGGAACACCCAGGAAGATATCTGCCGAGCGCTGATACAACTGGCACGACAGCCTGCCGT 43 Query 176581 TGCGGACATAGAACTGGAAACCGTAGTGACACGGCGG 176617 |||||||||||||| | | || |||||||| Sbjct 42 CAGCAACATAGAACTGGAACAGGCAATGGCACGGCGG 6 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622065294501120