Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_027364.1 Length=348113 Score E Sequences producing significant alignments: (Bits) Value seq60421 105 1e-17 seq39816 86.0 1e-11 >seq60421 Length=4773 Score = 105 bits (116), Expect = 1e-17 Identities = 307/465 (66%), Gaps = 16/465 (3%) Strand=Plus/Minus Query 332046 TCTTTCTCGATATTTTTACGATATTCATCATATGTTGTTGCACCAATTACACGAATCTCA 332105 ||||||||||||| | |||||||| | | || || ||||||| | | | ||| Sbjct 1280 TCTTTCTCGATATACTGTCGATATTCGTTAAGCGTAGTGGCACCAACACAATGCAGTTCA 1221 Query 332106 CCACGTGAAAGTGCTGGCTTAAGCATATTGCTCATGTCCATAGAACCATTACTTGCGGAA 332165 ||||| | | ||||||||| |||||||| | |||||| | |||| || | Sbjct 1220 CCACGCGCCAATGCTGGCTTGAGCATATTACCGGCGTCCATCGCGCCAT---CCGCCTTA 1164 Query 332166 CCAGCCCCAACCATAATATGAATTTCATCAATGAAAACAATAGT---ATTTTCACGTTTC 332222 || || ||||||||| | ||||| |||||||| || | ||| | | ||| ||||| Sbjct 1163 CCCGCACCAACCATAGTGTGAATCTCATCAATAAACAGAATGATCTGACCTTCTTGTTTC 1104 Query 332223 TTTAGTTCTTTTAGCAAATTGTCGATGCGTTCTTCAAATTCACCACGATACTTAGTACCA 332282 || ||||||| || | || ||| ||||| || |||||||| | |||| ||| Sbjct 1103 GACAGATCTTTTAACACCGCCTTGAGGCGCTCTTCGAACTCACCACGGAATTTAGCACCG 1044 Query 332283 GCAGTCAATGCACCAACATTTAGTG---AAAGAATTTCAACGTCTTTCAGGTGTTCAGGT 332339 ||| |||| ||||||| | |||| |||| || | | || | | || || Sbjct 1043 GCAATCAAGGCACCAAGGTCGAGTGACAAAAGGCGTTTA---TTCTTAATGCCCTCTGGC 987 Query 332340 ACGTTACCATCAGCAATAGCTTGTGCAAGCCCGTCGATGATTTGTGTTTTACCTACACCA 332399 || | ||||| | | || ||| || || || || | || |||||||| || || Sbjct 986 ACTTCACCATTAACGATGCGTTGAGCGAGGCCTTCTACAATCGCGGTTTTACCAACGCCC 927 Query 332400 GCTTCACCAGTGAGAATAGCATTCTTTTTGGTTTTGCG-AGCAAGAGTCTCAATCAATGC 332458 | ||| ||| ||| | || ||| ||||| ||| ||| | || | ||| ||| | | | Sbjct 926 GGTTCGCCAATGATCACAGGATTGTTTTTAGTTCGGCGCTGTAATA-TCTGAAT-AGTTC 869 Query 332459 AGACAAT-TCTTTCTGGCGACCAATCATAGGATCTAGTTTGCCTT 332502 | ||| || | | ||||||||| | || || || ||||||| Sbjct 868 GGCGAATCTCGTCGTCGCGACCAATAACCGGGTCGAGCTTGCCTT 824 >seq39816 Length=231 Score = 86.0 bits (94), Expect = 1e-11 Identities = 70/85 (82%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 210921 TGGCGGTGAAGGTGAGATTTGAACTCACGGAGGACTTTCGCCCTCGACGGTTTTCAAGAC 210980 |||||| | ||||| |||| |||| ||||| ||||||| || || ||||||||||||| Sbjct 112 TGGCGGAGGAGGTGGGATTCGAACCCACGGTAGACTTTCACCTACGTCGGTTTTCAAGAC 53 Query 210981 CGTTGCATTAAACCGCTCTGCCACT 211005 || |||||| ||| |||||||||| Sbjct 52 CGGTGCATTCGACCACTCTGCCACT 28 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1112272697047296