Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_027402.1 Length=240413 Score E Sequences producing significant alignments: (Bits) Value seq59718 123 4e-23 seq60379 113 7e-20 >seq59718 Length=6799 Score = 123 bits (136), Expect = 4e-23 Identities = 218/317 (69%), Gaps = 3/317 (1%) Strand=Plus/Minus Query 197598 AAAGGAAAATAATTGTGAAACAATATCTTGAGATGATGCAGAACATTCTGGACGAGGGTC 197657 || |||||||||| ||| ||||||| || | | ||| ||||||||||| | || Sbjct 2322 AACGGAAAATAAT---GAAGCAATATCACGACTTATTACAGCACATTCTGGACAACGGAA 2266 Query 197658 ATGTTAAAGGCGATCGTACTGGAACAGGGACGCTTTCTGTCTTTGGACGCCAGATGCGTT 197717 |||| ||||| || |||||||| || || || ||||| ||| ||||||| Sbjct 2265 CGAACAAAGAAGATCGCACAGGAACAGGTACTACATCGGTTTTTGGCTACCAAATGCGTT 2206 Query 197718 TTGATTTGCGTAAAGGTTTCCCGTTAGTCACGACTAAGAAACTCCACCTGCGTTCTATTA 197777 |||||||| ||||||| |||| |||| || || || | ||| | | || |||| Sbjct 2205 TTGATTTGAACGAAGGTTTTCCGTGTATCACAACGAAAAAGTTGCACTTAAGATCGATTA 2146 Query 197778 TCCATGAACTGCTGTGGTTCCTTAGTGGGGATACCAACACCAAATATCTGGAAGATAACG 197837 | || ||||| | |||||| | || || ||||||| ||| ||||| |||| || Sbjct 2145 TTCACGAACTCTTATGGTTCTTGCAAGGCGACACCAACATCAAGTATCTAAAAGAGCACA 2086 Query 197838 GCGTTACCATTTGGCGGGAGTGGCAAGATGAAAATGGGAACCTTGGCCCCCTGTATGGTG 197897 ||| | |||||| || ||| |||||| |||||||||| || || | || || Sbjct 2085 ACGTCAAAATTTGGGACGAATGGGCGGATGAAGATGGGAACCTGGGTCCTGTTTACGGAC 2026 Query 197898 CACAATGGAGACGTTGG 197914 ||||||||| |||| Sbjct 2025 ACCAATGGAGATCTTGG 2009 >seq60379 Length=4852 Score = 113 bits (124), Expect = 7e-20 Identities = 160/225 (71%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 197662 TAAAGGCGATCGTACTGGAACAGGGACGCTTTCTGTCTTTGGACGCCAGATGCGTTTTGA 197721 ||| |||||||| || || ||||| || | |||||| ||||| | ||||||||||| || Sbjct 2012 TAAGGGCGATCGGACCGGTACAGGTACACGTTCTGTTTTTGGCCATCAGATGCGTTTCGA 1953 Query 197722 TTTGCGTAAAGGTTTCCCGTTAGTCACGACTAAGAAACTCCACCTGCGTTCTATTATCCA 197781 |||| | ||||||| ||| | || || || || || || || |||| || |||||| Sbjct 1952 TTTGAGCGAAGGTTTTCCGCTCGTGACAACGAAAAAGCTTCATTTGCGGTCGATTATCAT 1893 Query 197782 TGAACTGCTGTGGTTCCTTAGTGGGGATACCAACACCAAATATCTGGAAGATAACGGCGT 197841 || || | |||||||| | || |||||||| | | || |||| || ||||| Sbjct 1892 CGAGCTTTTATGGTTCCTGCGCGGCGATACCAATATTGGCTGGCTCAAAGAAAATGGCGT 1833 Query 197842 TACCATTTGGCGGGAGTGGCAAGATGAAAATGGGAACCTTGGCCC 197886 | |||||| || ||| ||||||||||| | ||||| || Sbjct 1832 GTCGATTTGGGATGATTGGGCCGATGAAAATGGCGATCTTGGACC 1788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 768144112252160