Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq59922 199 3e-46 seq65525 84.2 2e-11 >seq59922 Length=6033 Score = 199 bits (220), Expect = 3e-46 Identities = 597/899 (66%), Gaps = 48/899 (5%) Strand=Plus/Plus Query 43697 AGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAG 43756 || ||||| | |||||||||||| | ||||||| ||| | |||||||| || | Sbjct 270 AGATTTGTTCTATTTCCAATTCAACACGATGACATTTGGGCTTTCTACAAAAAGGCCGAA 329 Query 43757 GCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAG---ACTTAGCACATTGGATT 43813 || || |||||||| ||||| ||||| | | ||| ||||| ||||| | Sbjct 330 GCTAGTTTCTGGACAGCCGAAGAGATTGATCT---TCAAGCCGACTTAATTGATTGGGAT 386 Query 43814 GC--ATTAAAACCACAA-GAAAAACATTTTAT--ATCTTTGGTTTTGGCGTTTTTTGCTG 43868 | | ||| | || ||| |||||| | | | | || ||||| ||||| || | Sbjct 387 ACGAAGCTGAACGATAATGAACGTCATTTTGTTAAACAT--GTATTGGCTTTTTTCGCGG 444 Query 43869 CGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGC-GCAAGAAGTTCAATTA 43927 | || || || || |||||||| || | || ||| | ||||||||| | Sbjct 445 CATCAGATGGAATTGTAAATGAAAACTTAGC-AGAGAATTTCTTGTCAGAAGTTCAGTAT 503 Query 43928 CCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATG 43987 | || ||| || ||| || ||||| ||| | || | ||||| ||||| || |||| | Sbjct 504 ACTGAGGCAAAATTTTTCTACGGGTTCCAAGTAGCAGTTGAAAACATTCACTCTGAAACG 563 Query 43988 TACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAAT 44047 || ||| | |||||||| ||||| ||||| | | || || | ||||||||| Sbjct 564 TATTCGCTTTTAATAGATACTTACATTAAAGACACGAAGGACAAAGAATATTTGTTTAAT 623 Query 44048 GCGATAGAAACAGT-ACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAA 44106 || || || ||| | || | |||| |||||||| ||||| | ||||| | Sbjct 624 GCTATTGACACAATGGAATGTG-TTAAGGTAAAAGCAGATTGGGCTTTGCGTTGGATTGA 682 Query 44107 TTCAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTT 44166 | || || || |||| |||| ||||||| || ||||||| |||||||| |||||||| Sbjct 683 T--GAAGGA-TCATTTGCAGAAAGACTTGTTGCATTTGCAGCAGTGGAAGGAATTTTCTT 739 Query 44167 TTCAGGATCGTTTGCGGCCATATTT--TGGTTAAAGAAACGAGGTTTGATGCCTGGGTTG 44224 ||||| || ||| | || |||| ||||| |||||| |||| ||||||| ||| | Sbjct 740 CTCAGGTTC-TTTCTGTTCA-ATTTACTGGTTGAAGAAAAGAGGACTGATGCCAGGGCTT 797 Query 44225 ACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTG 44284 | || || || |||||||| | || ||||| || || || ||||| || || || Sbjct 798 TCTTTCTCTAACGAGTTAATCTCAAGAGACGAAGGATTGCACTGTGATTTCGCATGTTTA 857 Query 44285 TTACTTGGATATCTAGGA----GACGATAAGCCTTCATGTAAGACAATTACAG-ATATTG 44339 ||| | | | | | | ||||| | | || | ||| || ||| | ||| Sbjct 858 TTA----TACACCAACCACATCGTTGATAAACTTCCAAAGGAAACAGTT-CAGAAAATTA 912 Query 44340 TTGTAGAGGCAGTAAAGATAGAACAAGAATTTATGACAACAGCATTACCTGTAAATTTAA 44399 | | || ||||| | || || |||||||||| |||| | || || || |||| Sbjct 913 TCCTTGACGCAGTTGAAATTGAGAAAGAATTTATTCTTGAAGCACTTCCCGTTAAGTTAA 972 Query 44400 TAGGAATGAA---TGAACTTTTGATGAACCAATATATTGAATACATTGCAGATCGTTTAC 44456 | |||||||| ||| ||||||| ||||| ||||| | |||| ||| | ||| Sbjct 973 TCGGAATGAACAGTGA---TTTGATGTCGCAATACATTGAGTTTGTTGCTGATAGATTAT 1029 Query 44457 TTTTGGAACTGGGTTGCGATAAACACTATATTGTAC----AAAACCCGTTTGATTTTATG 44512 | |||||| | || ||| ||| |||| || |||||| |||||||| ||| Sbjct 1030 TGTTGGAATTAGGAAACGAAAAA----GTATTCAACGCGACAAACCCATTTGATTTCATG 1085 Query 44513 GAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAAAACGCGTTGGAGAATATCA 44571 |||| ||||| | |||| ||||| ||||| |||||||| | ||||| ||||| || Sbjct 1086 GAAATGATTTCAATTCAAGGGAAAACGAACTTCTTTGAAAAGAGAGTTGGTGAATACCA 1144 >seq65525 Length=2385 Score = 84.2 bits (92), Expect = 2e-11 Identities = 189/282 (67%), Gaps = 8/282 (3%) Strand=Plus/Minus Query 19429 CCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAAT 19488 || |||||||||||||| || || ||||| |||||||||| || | |||||||| Sbjct 1486 CCTAAAATTGTAAATGGCCCAGAGATCTTTGATAAATATGTTGGAGGTACCGAAGAAAAG 1427 Query 19489 GTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCGCAAAAGTTC- 19547 | || | ||| || ||||||||||| |||| | | | | || | ||| | Sbjct 1426 ATGAGAGAAATCTTTAAGGAAGCTGAAGAAGACCAAAGA-GCTAATGGAGATGAAGCCCA 1368 Query 19548 TTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTCTG---- 19603 | |||||||| || | |||||| | || || | |||| | ||||||||||| Sbjct 1367 ACTTCACATTATTATCTTTGATGAAATCGATGCTGTGTGTAGACCAAGAGGTTCTGTATC 1308 Query 19604 --GTGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGT 19661 | | ||| |||||||| | ||||| |||||| | | ||||| |||| || || Sbjct 1307 ATCAGGCACTGGTGTACATGAATCAGTTGTAAATCAATTTTTAGCAAAACTAGATGGAGT 1248 Query 19662 TAACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAG 19703 | || | || |||||||| || || |||||||| || Sbjct 1247 AGAATCCCTTGACAACATTTTAGTAATCGGTATGACTAACAG 1206 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396927268257760