Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_027995.1 Length=41666 Score E Sequences producing significant alignments: (Bits) Value seq98262 113 1e-20 >seq98262 Length=464 Score = 113 bits (124), Expect = 1e-20 Identities = 184/259 (71%), Gaps = 11/259 (4%) Strand=Plus/Plus Query 41166 TCACTGAACAAAGTAGAAATCATT-GGCAACTTAGGCAACGATCCAGAAATCCGTTACAT 41224 ||| | || ||||| || || | | ||||||||||| || |||||| | || ||||| Sbjct 101 TCAGTCAATAAAGT-GATATTAGTAGGCAACTTAGGACGTGACCCAGAAGTGCGCTACAT 159 Query 41225 GCCAAGCGGCGGCGCGGTTGCTAATCTAAGCATCGCCACAACTGAAAGCTGGAAGGATAA 41284 |||| |||||||| ||| |||| | || || || ||| | |||| |||||| ||||| Sbjct 160 GCCAGATGGCGGCGCAGTTTGTAATTTTAGTATTGCTACATCAGAAAACTGGAAAGATAA 219 Query 41285 AACCACCGGCGAGAAGAAAGAACAAACGGAATGGCACCGCGTTGTCATCT-TCG--GTAA 41341 | | ||||| ||| ||||| |||| ||||||||| |||| || | ||| || Sbjct 220 A---AGCGGCGTTAAGCAAGAAAAAACCGAATGGCACAATATTGTGATGTATCGCCGT-- 274 Query 41342 GCTGGCAGAAATTGCTAGCGAATACCTGCGCAAAGGTAGCAAGGTGTTCATTGAAGGCAG 41401 | ||||||||||| | || || ||| ||||||||| | | | | |||||| | Sbjct 275 -TTAGCAGAAATTGCAGGTGAGTATCTGAAAAAAGGTAGCGCGATTTATGTAGAAGGCCG 333 Query 41402 CCTGCGAACGCGTAAATGG 41420 ||| ||| ||||||||| Sbjct 334 TTTGCAAACACGTAAATGG 352 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 133036936380672