Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq59922 185 1e-41 seq89378 102 1e-16 seq10218 95.1 2e-14 seq63919 86.0 8e-12 >seq59922 Length=6033 Score = 185 bits (204), Expect = 1e-41 Identities = 917/1439 (64%), Gaps = 32/1439 (2%) Strand=Plus/Minus Query 110662 GTGCTTGTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGT 110721 ||||||||| || |||| |||||||||| | | ||| |||||||||| || Sbjct 3171 GTGCTTGTTAACGATGATGAACTCACCTGACAACACACGTCTTGTATAGATGTTTGAAGT 3112 Query 110722 GTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGG 110781 |||||||| || ||||| || || || | |||||| || || || |||||||||||||| Sbjct 3111 ATATGGTTCGAAACATTCGTTGTTTCCAAGGATTTGAGCTGTTGAAGCTGTTGGCATTGG 3052 Query 110782 TGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACATCCCA 110841 ||||| || | |||||| | ||| | |||| | | | | || | || ||||| Sbjct 3051 TGCCAATAACAATGAGTTACGCACACCGTGCTCCATCACTTCTGCTTTCAATACGTCCCA 2992 Query 110842 GTCGTAGTTG-AGCTTGGTTTCACCTTCCCACATGTCAAACTGAAGCACCCCTTGGGACG 110900 || | || |||| | || || |||||| || || || | |||| || Sbjct 2991 TTCCCATCTGCTTGTTGGAGTAACATT-CCACATATCGAATTGGAATTGACCTTTTGAAA 2933 Query 110901 CGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTC-ACAGCTCGCC 110959 | || || || ||| | | || || | || | ||| ||| || || || | || Sbjct 2932 CTGGCGATCCTTCATAAGATTGGTATGGTCCATCAACTTTAGCTAAATCTTTAGAT-GCA 2874 Query 110960 TCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCT 111019 || || |||| |||||| |||||||| | |||| | | ||||| ||| Sbjct 2873 GTCATTGAAGCGTAATACATTGTTTCAAAAACTTCTCTGTTCAATGCTCTTGCTTCTTCT 2814 Query 111020 GAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCA 111079 || ||||||| | | || || || |||| || | ||||||||||| || ||| Sbjct 2813 GATTCAAATGGCAATCCCATTAAGATGAAAGCATCTGCTAACCCTTGAACACCTAATCCA 2754 Query 111080 ATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCA 111139 || || | ||| ||||| ||||| ||| || ||||| || || || || | ||| Sbjct 2753 ATTGGACGGTGACGCATGTTAGAGTTTTTAGCTTCTTCAACTGGGTAGAAGTTACCATCA 2694 Query 111140 ATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCA 111199 |||| | || | || || | | || | || | ||| || | ||| Sbjct 2693 ATGATTTTATTCAAGTTCAATGTCGCTTGGTACGTTACCTCGAACAATTTGTCGTGATCG 2634 Query 111200 AAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACA 111259 || | | || ||| | ||||| || || | || | || ||||| || ||||| Sbjct 2633 AATTTCC---CTTCATCAGTAACATATTTAGGCAATGCTAAAGAAGCCAAGTTACAAACT 2577 Query 111260 GCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATC 111319 || |||||| | |||||||||| ||| || ||||||||||| ||| |||||| Sbjct 2576 GCAACCTCATCTGGCGCAGTGTACTCTATAATCTCAGTACATAAGTTTGAAGACTTAATT 2517 Query 111320 GTCCCCAAATTCTTTTGGTTACTCTTCTTG---TTGCACGCATCCTTGTAGAGCATGTAG 111376 || || || || | |||||| | | ||| ||||| ||||| ||||| | |||||| Sbjct 2516 GTACCTAAGTTTTGTTGGTT--TGATTTTGAGTTTGCA-GCATCTTTGTACAACATGTAA 2460 Query 111377 GGCGTCCCCGTCTCCGTCTGTGATT-TGAGAATAGCCTT---CCAAACATCGGCGGCTGG 111432 || || || ||||| | || |||| | ||| | || ||||| || ||| Sbjct 2459 GGAGTACCTGTCTCAATTTGAGATTCTAAGATT----TTGAACCAAAGGTCTTGTGCT-- 2406 Query 111433 TACAATGGCGTT-GGCCCGTCCCT-CCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCC 111490 | | || || || ||||| | |||||||| ||||| | ||||| || || Sbjct 2405 TTGATTGTTTTTCTTCCTTTCCCTGCTTTTTCGTACTTCGTGTACAACGCTTCGAATTCA 2346 Query 111491 TCACCCACCGCGTCGGAGAGACCTGGTGCCTT-GTCTGGACAGAAAAGAGACCATTGACC 111549 ||| | | || || |||||||| || || || ||||| | | || ||| | || Sbjct 2345 GCACTGTGCACATCTGAAAGACCTGG-GCATTCGTGCGGACACATTAAAGTCCACTCTCC 2287 Query 111550 ACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCT 111609 | ||| | || || | |||||| | ||||||| ||||| | |||| | |||||| Sbjct 2286 ATTTTCTTTCACACGTTGCATGAATAAATCTGGAACCCACAAAGCGTAAAATAAATCTCT 2227 Query 111610 ACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGT-AACTCAAGGAACTCCATGATATCCG 111668 | |||||| | ||| || || || | || || | ||| || | | ||| | Sbjct 2226 TGCTCTTTGCTCTTCTTTACCGTGATT-TTTCTTCAAGTCTAAGAAGTCAAATACATCAG 2168 Query 111669 CGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCG---ACGCCCAGCTTGATTTA 111725 | ||||| ||||| | || | ||||| ||| || || || | ||| |||||| || Sbjct 2167 CATGCCAAGGCTCCAAGTACATTGCGAAAGAACCTTTACGTTTTCCTCCACCTTGATCTA 2108 Query 111726 CATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCAT 111785 | || | || || |||||||||| | | |||||||| ||||| | || ||| | Sbjct 2107 CGTATCTAGCAGTATCGTTAAATACTCTTAACATTGGAACGATACCGTTAGAAGCACCGT 2048 Query 111786 TTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCC 111845 |||| || || || | || | | | || || || ||||| || | Sbjct 2047 TTGTTCCTTTGATGTATGAACCTGTCGCACGGATGTTGTGCATAGCCAATCCAATTCCAC 1988 Query 111846 CAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGT 111905 |||| | | ||||| || ||||| | | | || |||| || || | || | Sbjct 1987 CAGCTGATTGAGAGATCTGAGCACATTGTTTTAATGTGTCATAAATTCCTTCAATACTAT 1928 Query 111906 CCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGA 111965 | ||||| | | | |||||| ||| ||||| || ||| |||| || |||| || | Sbjct 1927 CTTCCTTCATTGTTAAAAGGAAACAAGATGACATTTGTGGTTTTGGCGTTCCAGAGTTAA 1868 Query 111966 AGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGACATCTTGTCGTATGTCTCCAAGA 112025 | | |||||||||||||| ||||| |||| ||||| || |||||||| | Sbjct 1867 ACAACGTTGGTGTTGCGTGTGTGAACCATCCTTCTGACATTAAGTTGTATGTCTTAATTG 1808 Query 112026 CAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATGTACTGTGGG 112084 |||| || || |||| ||| || || | | || ||||| ||||| | |||||| Sbjct 1807 CAGAGTCGATATCTTTTTTGTGAATTCCAACAGAAACACGCATCAACATTTGTTGTGGG 1749 >seq89378 Length=630 Score = 102 bits (112), Expect = 1e-16 Identities = 291/442 (66%), Gaps = 18/442 (4%) Strand=Plus/Minus Query 11303 AGGTTTGCCAACTCCGCACCAGAGAATCCAGTTGTTTGCTTGGCAATACTCGCGAGACTG 11362 ||||| ||||| || |||||||| || |||| |||| | ||||| | | | ||| Sbjct 442 AGGTTAGCCAAATCAGCACCAGAAAACCCAGGTGTTCCCCGGGCAACAATGCCAAGATCA 383 Query 11363 ACATCTTCAGATAACTTCTTGTCTCGGGCATGGACTCCCAAAATCTTCTTGCGACCTCGC 11422 || | ||| || | | || |||| ||| ||||| | | ||||| || Sbjct 382 ACGCCGTCATCTAGAGGCACCTTACGCACATGTACTTTTAAAATTTGTTCACGACCACGA 323 Query 11423 ACACTTGGAAGACCCACTTGGATCTTGCGATCAAAACGACCCGGGCGAAGGAGGGCGTCA 11482 | | || || || || | || || |||||||||||| || ||||| | | || | | Sbjct 322 ATATCCGGCAGCCCGACATAGACCTGGCGATCAAAACGTCCAGGGCGCAACAATGCTTTA 263 Query 11483 TCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTG---TCA 11539 || | | ||| ||| ||||| || ||||| || | |||||| |||||| ||| Sbjct 262 TCTAACACATCGGGGCGGTTAGTCGCAGCAATGACAATAATGCC---TTCATTGCCTTCA 206 Query 11540 AAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATT--TGCTG 11597 || |||||||| || || | |||||| | ||||| || | ||||||||| | | Sbjct 205 AAACCATCCATTTCTACCAGCAGTTGATTGAGGGTTTGCTCACGCTCATCATTACCACCG 146 Query 11598 GCAT-ACCACCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATA 11656 ||| |||||| || || || || || || || |||||||| || || | ||| Sbjct 145 CCATGGCCACCACCA---CGGTGACGACCTACGGCGTCGATCTCATCGATAAATATAATG 89 Query 11657 CATGG---TTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACA 11713 || || || |||| ||| ||||| | || ||||||| ||||||||| Sbjct 88 CAGGGCGCCTGCTTTT---TGGCTTGCTCAAACATGTCCCGAACCCGGGAAGCACCCACA 32 Query 11714 CCAACAAACATCTCCACAAAGT 11735 || |||||||| || ||||||| Sbjct 31 CCCACAAACATTTCTACAAAGT 10 >seq10218 Length=314 Score = 95.1 bits (104), Expect = 2e-14 Identities = 138/193 (72%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 11624 CCCACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCA 11683 || |||||||||||||||||||| |||| ||| |||||| ||||| || ||||| Sbjct 42 CCAACCGCATCAATCTCATCAATAAAGATAATGCATGGTGAATTTTTCTTCGCAGTTTCA 101 Query 11684 AAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCA 11743 || | || || || | ||||| ||||||||||||||||| ||||| | || || Sbjct 102 AACATGTCACGTACACGAGATGCACCAACACCAACAAACATCTCAACAAAATCTGAACCA 161 Query 11744 GAGCACTGG--ATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCT 11801 || | | | | |||||| || || | |||||| || || || || || | | || | Sbjct 162 GA--AATAGTAAAGAATGGAACCTTGGCTTCACCAGCAATTGCGCGCGCCAATAATGTTT 219 Query 11802 TTCCCGTACCTGG 11814 | || |||||||| Sbjct 220 TACCTGTACCTGG 232 >seq63919 Length=2755 Score = 86.0 bits (94), Expect = 8e-12 Identities = 142/204 (70%), Gaps = 6/204 (3%) Strand=Plus/Minus Query 11538 CAAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCT- 11596 |||| |||||||| || ||||| ||||| | || | ||||| ||||||||| || Sbjct 1580 CAAATCCATCCATTTCTACAAGTAACTGATTGAGAGTATTGTCTCTTTCATCATTTCCTC 1521 Query 11597 --GGCATACCACCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAA 11654 | | ||||| || || ||| || || ||||| |||||||||||||||| | Sbjct 1520 CAGTTAATTTTCCAGCTCT---TTTCTTACCAACAGCATCGATCTCATCAATGAAGATGA 1464 Query 11655 TACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACAC 11714 || ||||| ||| || | || | | || | ||| | || ||| ||| || |||| Sbjct 1463 TAGATGGTGAATTCTCTCTTGCTTTCTTGAATAAATCTCTTACTCTTGAGGCTCCTACAC 1404 Query 11715 CAACAAACATCTCCACAAAGTTTG 11738 |||| ||||| || ||||||| || Sbjct 1403 CAACGAACATTTCAACAAAGTCTG 1380 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627175113139200