Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq59922 134 2e-26 seq64137 109 7e-19 seq75063 107 2e-18 seq89378 93.3 5e-14 seq30618 84.2 3e-11 seq68204 82.4 9e-11 >seq59922 Length=6033 Score = 134 bits (148), Expect = 2e-26 Identities = 881/1402 (63%), Gaps = 25/1402 (2%) Strand=Plus/Minus Query 118173 CGTCTCAGATAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGG 118232 ||||| |||||| || | || ||||| || || || || ||||| || | |||||| Sbjct 3134 CGTCTTGTATAGATGTTTGAAGTATATGGTTCGAAACATTCGTTGTTTCCAAGGATTTGA 3075 Query 118233 GCTGTGGAGGCTGTGGGCATGGGTGCCA-TGAGAAGGCTGTTACGGAGACCCTTTTCCCT 118291 ||||| || ||||| ||||| ||||||| | | || | |||||| | ||| | ||| | Sbjct 3074 GCTGTTGAAGCTGTTGGCATTGGTGCCAATAACAATGA-GTTACGCACACCGTGCTCCAT 3016 Query 118292 AATGCGTTCCTTGAGAGCGTCCCAGTCGTAGTTGAGCTTTGTCTCCCCCTGCCACATATC 118351 | | | || | ||||||| || | || ||| | | ||||||||| Sbjct 3015 CACTTCTGCTTTCAATACGTCCCATTCCCATCTGCTTGTTGGAGTAACATTCCACATATC 2956 Query 118352 AAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAAC 118411 || |||| ||||| || |||||||||| ||| | | | ||||| || ||||| Sbjct 2955 GAATTGGAATTGACCTTTTGAAACTGGCGATCCTTCATAAGATTGGTATGGTCCATCAAC 2896 Query 118412 CTCCGCCAATTCGG-AGCTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAG 118470 | || || || || | || | | |||| ||||||||||||||||| Sbjct 2895 TTTAGCTAAATCTTTAGATGCAGTC-ATTGAAGCGTAATACATTGTTTCAAAAACTTCTC 2837 Query 118471 CATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCG 118530 |||| ||| | || || || || ||||| | | || || || || |||| | Sbjct 2836 TGTTCAATGCTCTTGCTTCTTCTGATTCAAATGGCAATCCCATTAAGATGAAAGCATCTG 2777 Query 118531 CGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCT 118590 | | ||||| ||||| | |||||||| || || | ||| ||||| || ||| | Sbjct 2776 CTAACCCTTGAACACCTAATCCAATTGGACGGTGACGCATGTTAGAGTTTTTAGCTTCTT 2717 Query 118591 CCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGA 118650 | || || || || || | ||| || | |||| | || || | | || | Sbjct 2716 CAACTGGGTAGAAGTTACCATCAATGATTTTATTCAAGTTCAATGTCGCTTGGTACGTTA 2657 Query 118651 TTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGG 118710 || | || |||| ||| || | | || ||| | ||||| ||||| | | Sbjct 2656 CCTCGAACAATTTGTCGTGATCGAATTTCCCT---TCATCAGTAACATATTTAGGCAATG 2600 Query 118711 CGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCG 118770 | | || |||| ||||| || | |||||| |||||||||||||||| || | Sbjct 2599 CTAAAGAAGCCAAGTTACAAACTGCAACCTCATCTGGCGCAGTGTACTCTATAATCTCAG 2540 Query 118771 TGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACG 118830 | || ||||||||| |||||| || || ||||| | ||| ||||| |||| ||| | Sbjct 2539 TACATAAGTTTGAAGACTTAATTGTACCTAAGTTTTGTTGGTTTGATTTTGAGTTTGCAG 2480 Query 118831 CATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACT-TGAGAATAGCCTT- 118888 |||| ||||| | |||||| || || || ||||| |||| || | | ||| | || Sbjct 2479 CATCTTTGTACAACATGTAAGGAGTACCTGTCTCAATTTGAGATTCTAAGATT----TTG 2424 Query 118889 --CCAGACATCGGCAGCTGGCACAGTGGCGTTGGCTCGCCCCTCTTCCTCGTACTTTGTG 118946 ||| | || ||| | || | || ||| ||| |||||||| ||| Sbjct 2423 AACCAAAGGTCTTGTGCTTTGATTGTTTTTCTTCCTTTCCCTGCTTTTTCGTACTTCGTG 2364 Query 118947 TAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTT-ATCTGGGCA 119005 || | ||||| || || ||| | ||||| || ||||| || || | || || Sbjct 2363 TACAACGCTTCGAATTCAGCACTGTGCACATCTGAAAGACCTGG-GCATTCGTGCGGACA 2305 Query 119006 GAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAG 119065 | | || ||| | ||| || | || || | |||||| | ||||| | ||| | Sbjct 2304 CATTAAAGTCCACTCTCCATTTTCTTTCACACGTTGCATGAATAAATCTGGAACCCACAA 2245 Query 119066 CGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAA 119125 || | || | ||| | | ||||| | || ||||| ||| || || Sbjct 2244 AGCGTAAAATAAATCTCTTGCTCTTTGCTCTTCTTTACCGTGATTTTTCTTCAAGTCTAA 2185 Query 119126 AAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACG--- 119182 ||||| | | ||| || ||||| || |||| ||||| |||| || || ||||| Sbjct 2184 GAAGTCAAATACATCAGCATGCCAAGGCTCCAAGTACATTGCGAAAGAACCTTTACGTTT 2125 Query 119183 ACGACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGAT 119242 | ||| | || | ||| || || ||||| |||||||||| | | |||||||| ||| Sbjct 2124 TCCTCCACCTTGATCTACGTATCTAGCAGTATCGTTAAATACTCTTAACATTGGAACGAT 2065 Query 119243 ACCATCGGATTGGCCATTTG-TCCCCCGA-ATACGAGACTTATTGGCTCTGACATCGTGG 119300 ||| | || || |||| ||| || || || || | || | || | ||| Sbjct 2064 ACCGTTAGAAGCACCGTTTGTTCCTTTGATGTATGAACCT--GTCGCACGGATGTTGTGC 2007 Query 119301 ATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCG 119360 || || ||||| || || || | | ||||| || || || | | | || | Sbjct 2006 ATAGCCAATCCAATTCCACCAGCTGATTGAGAGATCTGAGCACATTGTTTTAATGTGTCA 1947 Query 119361 TAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGC 119420 || || || || || || |||| ||| | ||||| || |||||||| || Sbjct 1946 TAAATTCCTTCAATACTATCTTCCTTCATTGTTAAAAGGAAACAAGATGACATTTGTGGT 1887 Query 119421 CTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCTTGGGACATC 119480 | || || |||| ||| || | |||||||| ||||| ||||| |||| ||||| Sbjct 1886 TTTGGCGTTCCAGAGTTAAACAACGTTGGTGTTGCGTGTGTGAACCATCCTTCTGACATT 1827 Query 119481 TTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGC 119540 || ||| |||| | | | | || |||| |||||| || | || || ||| Sbjct 1826 AAGTTGTATGTCTTAATTGCAGAGTCGATATCTTTTTTGTGAATTCCAACAGAAACACGC 1767 Query 119541 ATAAACATGTATTG-GGGTGTT 119561 || ||||| | ||| ||| ||| Sbjct 1766 ATCAACATTTGTTGTGGGCGTT 1745 >seq64137 Length=2701 Score = 109 bits (120), Expect = 7e-19 Identities = 247/368 (67%), Gaps = 5/368 (1%) Strand=Plus/Minus Query 118525 CATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAG 118584 |||| || || ||||| ||||||| |||| || | || ||| | ||| || | || Sbjct 1694 CATCAGCAAGCCCTTGCACACCGATTCCAACAGGTCTATTTCTAAAATTTGAATATTCAG 1635 Query 118585 CGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCT 118644 | || ||||| || || |||| ||||| || || | || || || | | | Sbjct 1634 CTTCAGGAACTGGATAGAAGTTATTATCAATAACTCTGTTCAAGTTCTTTGTAATGATCA 1575 Query 118645 TTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAG 118704 | || | |||||| ||| ||||||| ||||| | | | ||||| || || || | Sbjct 1574 TAGTAACTTCATGTAGCCTTTCGTAGTCAAAGGTACCA---TCTTCTAATACGTATTTTG 1518 Query 118705 GAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAA 118764 | | | ||||| || || ||||| |||| | ||| |||||||||||||| || | Sbjct 1517 GCAATGAAATTGAGGCGAGGTTACATACAGCTACTTGATCTTTATCAGTGTACTCCATGA 1458 Query 118765 TTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGT 118824 | || ||| | |||||||||||| || || || | |||| || || || ||| | Sbjct 1457 TCTCACAGCAGAGGTTTGAACTCTTGATAGTTCCAAGATTCTGCTGGTTAGATTTTCCAT 1398 Query 118825 TA-CACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATA 118883 || || | |||||| || ||||||||||| || ||||| | || |||| || || Sbjct 1397 TAGCATG-ATCCTTATACAGCATGTATGGGACTCCAGTCTCTATCTGTGACTCAAGGATG 1339 Query 118884 GCCTTCCA 118891 || ||||| Sbjct 1338 GCATTCCA 1331 >seq75063 Length=1318 Score = 107 bits (118), Expect = 2e-18 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 130034 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 130093 ||||| || | ||||| | ||||| ||||| || || |||||||| ||| | ||| Sbjct 426 CCCTCATCTCTTGAGATCAACTCATTAGAGAAACAAAGGCCTGGCATAAGAGATCTCTTT 485 Query 130094 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 130153 |||||||||||||| || ||||| || ||||||||||| || || || ||||| || ||| Sbjct 486 TTCAACCAGAAAATTGCGCAAAAAGACCCAGAGAAGAAAATTCCTTCTACACAAGCAAAC 545 Query 130154 GCAAAGAGACGCTCAGCAAAGGAG 130177 |||| | | |||||||| ||| Sbjct 546 GCAATCAATCTTTCAGCAAATGAG 569 >seq89378 Length=630 Score = 93.3 bits (102), Expect = 5e-14 Identities = 197/290 (68%), Gaps = 12/290 (4%) Strand=Plus/Minus Query 14063 CGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCC 14122 |||||||| || || ||||| | | || | || | | ||| |||||| ||||| Sbjct 295 CGATCAAAACGTCCAGGGCGCAACAATGCTTTATCTAACACATCGGGGCGGTTAGTCGCA 236 Query 14123 GCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTG 14182 || ||||||| ||||| | | ||||| |||||||| || || ||||||||| Sbjct 235 GCAATGACAATAATGCCTTCATTGCCTTCAAAACCATCCATTTCTACCAGCAGTTGATTG 176 Query 14183 ATGGTTTGTTCGCGTTCATCATTCGCA--GGCATA-CCACCCGCACTGCGTTGCTTACCG 14239 | |||||| || || |||||||| || | ||| ||||| ||| | | | ||| Sbjct 175 AGGGTTTGCTCACGCTCATCATTACCACCGCCATGGCCACCACCACGGTGACG---ACCT 119 Query 14240 ACGGCGTCAATTTCATCGATGAAAACGATACATGGT---TGATTTTCACGGGCAACTTCA 14296 |||||||| || |||||||| || | || || || || |||| ||| ||| Sbjct 118 ACGGCGTCGATCTCATCGATAAATATAATGCAGGGCGCCTGCTTTTT---GGCTTGCTCA 62 Query 14297 AAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAA 14346 || || || || || | ||||| |||||||||||||| || ||||| Sbjct 61 AACATGTCCCGAACCCGGGAAGCACCCACACCCACAAACATTTCTACAAA 12 >seq30618 Length=250 Score = 84.2 bits (92), Expect = 3e-11 Identities = 172/251 (69%), Gaps = 6/251 (2%) Strand=Plus/Minus Query 14180 TTGATGGTTTGTTCGCGTTCATCATT--CGCAGGCATACCACCCGCACTGCGTTGCTTAC 14237 |||| || |||||||| || ||||| ||| | || |||||||| || || | Sbjct 248 TTGAGCGTCTGTTCGCGCTCGTCATTGCCGCCGCCAAG--ACCCGCACCACGGTGACGGC 191 Query 14238 CGACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCACGGGCAACTTCAA 14297 |||| ||||| ||||||||||| || | ||| || ||| ||||| ||| || | Sbjct 190 CGACAGCGTCGATTTCATCGATAAAGATGATGCAGGGTGCATTTTTCTTGGCCTGCTCGA 131 Query 14298 AGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCGG 14357 | || || || || | | ||||| || || ||||||||||| || |||| || | | Sbjct 130 ACATGTCGCGGACGCGGCTTGCACCAACGCCGACAAACATCTCGACGAAATCGGAACCCG 71 Query 14358 AACATTG-GATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTC 14416 | || | || ||| || || || | ||| || || | ||| ||||| || | |||||| Sbjct 70 -ATATGGTGAAGAACGGCACATTGGCTTCGCCTGCAACGGCGCGGGCCAGCAAGGTCTTG 12 Query 14417 CCCGTCCCTGG 14427 || || || || Sbjct 11 CCGGTACCGGG 1 >seq68204 Length=1977 Score = 82.4 bits (90), Expect = 9e-11 Identities = 141/200 (71%), Gaps = 6/200 (3%) Strand=Plus/Minus Query 14150 TCAAAGCCATCCATCTCAGTCAAG-AGTTGATTGATGGTTTGTTCGCGTTCATCATT--C 14206 ||||| ||||||||||| | |||| | || |||| ||||| ||||| |||||||| | Sbjct 1976 TCAAAACCATCCATCTC-GACAAGCAACTGGTTGAGCGTTTGCTCGCGCTCATCATTGCC 1918 Query 14207 GCAGGCATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACG 14266 || | | | ||| || | ||| || ||| || || || || |||||||| || | | Sbjct 1917 GCCGCC--AAGACCGGCGCCGCGATGACGACCTACAGCATCGATCTCATCGATAAAGATG 1860 Query 14267 ATACATGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACA 14326 ||||| || ||| | ||| ||||| || || ||||| | | ||||| || Sbjct 1859 ATACAAGGCGCATTCTTTTTGGCTTGCTCAAACATGTCGCGCACACGGCTTGCACCAACC 1800 Query 14327 CCCACAAACATCTCCACAAA 14346 || |||||||| |||||||| Sbjct 1799 CCGACAAACATTTCCACAAA 1780 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 617591407013120