Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq64137 161 1e-34 seq75063 138 1e-27 seq10218 102 9e-17 seq89378 93.3 5e-14 seq68204 84.2 3e-11 >seq64137 Length=2701 Score = 161 bits (178), Expect = 1e-34 Identities = 639/985 (65%), Gaps = 38/985 (4%) Strand=Plus/Plus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 |||||| ||| | ||| | || | || ||||||||| | | ||| | || |||| Sbjct 662 CCACAGACAATGCTTATGAGAGTCTCTATTGGTATTCATAAGAATGACTTAGAATCTGCA 721 Query 104282 TTGGAGACATACGA---CAAGATGTCCCAAGGTATG-TTCATTCACGCAACACCAACCCT 104337 || |||||||| || || || ||| || ||| |||| ||||| ||||||||||| Sbjct 722 TTTGAGACATATGATCTCATGA-GTCAGAA---ATGGTTCACACACGCCACACCAACCCT 777 Query 104338 CTTCAATGCTGGTACACCAAGACCCCAAATG--TCCAGTTGCTTCCTTATCGCCAACAAG 104395 ||| ||||||||||| |||| ||| |||||| | || ||||| | | || | | Sbjct 778 CTTTAATGCTGGTACCCCAAAACCACAAATGAGTTCA--TGCTTTTTATTAGCAATGCGG 835 Query 104396 GAGGACTCAATCAACGGTATCTATGGAACTCTTACGG-AGTGTGCGCAAATCTCAAAGTG 104454 || || ||||| | || || | | ||| |||| | ||||| ||||| ||| Sbjct 836 GATGATTCAATTGAAGGAATTTTCGAAACA-TTACAACAATGTGCTATTATCTCTAAGAA 894 Query 104455 GGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGG 104514 ||||| || ||||| || | || | | ||| | | | || || | || Sbjct 895 TGCTGGAGGAATTGGATTGGCTGTTCACTGTATTAGATCAACTTCTTCCTACATCAGAGG 954 Query 104515 GACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCG 104574 ||||| ||||| ||| |||| || | ||||||||| | || || || | ||| || | Sbjct 955 AACAAACGGTCACTCAAATGGACTTGTCCCAATGCTTAGGGTCTTCAATGACACTGCAAG 1014 Query 104575 CTATGTAAATCAAGCTGGGCGTC---GAAAGGGATCTATCGCAGTCTATCTTGAGCCATG 104631 ||||| | |||| || || |||||||| || |||| |||| || || ||||| Sbjct 1015 ATATGTTGACCAAGGAGGCGGTAAGAGAAAGGGAGCTTTCGCTATCTACCTCGAACCATG 1074 Query 104632 GCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCG 104691 ||| | ||||| || |||||| | ||| | ||||| ||| | || || | | Sbjct 1075 GCATCCAGATATTTATGACTTCCTTAACTTGAGGAAGAACCATGGTAAAGATGAACAGAG 1134 Query 104692 GTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGA 104751 | || ||||||| |||| | ||| || ||| | ||||||| |||||| || | Sbjct 1135 AGCAAGAGACCTCTTCTACGCTTTGTGGGTTAGTGATATATTCATGAGGAGAGTAGAAGC 1194 Query 104752 GAGTGGCAATTGGTCTCTCTTTTGTCCAGAC-AAGGCACCTGGTCTCTCCGATGCCGTGG 104810 || | ||| | ||||| |||||| | || || || | | | ||| | || Sbjct 1195 TGATGAAGACTGGACACTCTTCTGTCCAAATGAATGCCCCCAAT-TGTTCGAAACTTGGG 1253 Query 104811 GTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAG---GAAG---AAGGTCGGGCGACTG 104864 | | || ||||||| || || || || ||| |||| |||| | ||||| Sbjct 1254 GAAAAGAATTTGAAGAACTCTATGAGAAATATGAGACTGAAGGAAAAGGAAGAAAGACTG 1313 Query 104865 CGACGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTA 104924 | || | | || | ||||| || || || |||| || | |||||||| Sbjct 1314 TCAAGGCACAAC------ATCTATGGAATGCCATCCTTGAGTCACAGATAGAGACTGGAG 1367 Query 104925 CACCATACATGCTTTACAAAGACGCCTG-TAACCAAAAGAGTAATCAAAAGAATTTGGGT 104983 ||||||||||| || || || | || ||| ||| ||| || ||||| | || Sbjct 1368 TCCCATACATGCTGTATAAGGAT-CATGCTAATGGAAAATCTAACCAGCAGAATCTTGGA 1426 Query 104984 GTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACG 105043 ||||||||||| || ||||| || ||| |||| | || || |||||| | Sbjct 1427 ACTATCAAGAGTTCAAACCTCTGCTGTGAGATCATGGAGTACACTGATAAAGATCAAGTA 1486 Query 105044 GCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAG-AC 105102 ||||| ||||||||||| ||||| | | || || || || || ||| | | | || Sbjct 1487 GCTGTATGTAACCTCGCCTCAATTTCATTGCCAAAATACGT--AT-TAGA-AGATGGTAC 1542 Query 105103 ATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGT 105162 ||||| || |||| || || |||||||| | | | || || ||| | |||||||| Sbjct 1543 CTTTGACTACGAAAGGCTACATGAAGTTACTATGATCATTACAAAGAACTTGAACAGAGT 1602 Query 105163 TATTGATAGAAATTTTTACCCCGTT 105187 |||||||| || || || || ||| Sbjct 1603 TATTGATAATAACTTCTATCCAGTT 1627 >seq75063 Length=1318 Score = 138 bits (152), Expect = 1e-27 Identities = 339/504 (67%), Gaps = 24/504 (5%) Strand=Plus/Minus Query 94447 GCTGAAGAGGTAGATCTCTCAAAGGATTTGGACGATTGGAA-GACTCTAAATGAAA--AT 94503 ||||||||| ||||| | | ||||| | |||||||| || ||||| ||| || Sbjct 916 GCTGAAGAGATAGATTTGGCTTCAGATTTAAAAGATTGGAATGA---TAAATTAAATGAT 860 Query 94504 GAAAAGAAA---TTCATAAAATACATCCTGGCATTCTTTGCTGGATCCGATGGAATTGTT 94560 || ||| | ||||| |||||| | || || ||||| |||| || ||||||||||| Sbjct 859 GATGAGAGACACTTCATCAAATACGTGCTTGCTTTCTTCGCTGCTTCTGATGGAATTGTC 800 Query 94561 TTTGAGAATATCAATAACAACTTTGCTGATGAGGTGCAATCCTCTGAAGCGAGATCCTTC 94620 |||||||| | | | | ||| |||| ||| || ||| | |||||| |||| |||| Sbjct 799 CTTGAGAATCTTATTGAATGCTTCGCTGCTGAAGTACAAATCCCTGAAGTTAGATGCTTC 740 Query 94621 TATGCGTATCAGTGTCATAATGAA-ATGGTGCATGGGGAGACATACAGTAAACTCATAGA 94679 |||| | || || || ||| | | || || | || || ||| | || || || Sbjct 739 TATGGCTTCCAAAGT-ATGATGGAGAATGTTCACAGTGAAACTTACTCTCTCCTTATTGA 681 Query 94680 CAAGTATATTAAGGATGGTGCTGAGAAGAAGCAG-----CTCTTTGAAGCCATCCAAACA 94734 | ||||||| ||| || | ||||| || || ||| | || || | | Sbjct 680 TACTTATATTAGTGAT----CTCA-AAGAAAAAGATTTCCTTTTTAAGGCTATTGATAAT 626 Query 94735 GTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCGCGT 94794 || | || | ||||| || || |||||| | || ||| || ||| || | | Sbjct 625 ATTGAAACTGTTAAGAAGAAGGCTGACTGGGCTTTTAAATGGATTAATAAGAA-TGAC-- 569 Query 94795 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 94854 || |||||||| || | | || ||||| ||||| || || || ||||||||||| || Sbjct 568 TCATTTGCTGAAAGATTGATTGCGTTTGCTTGTGTAGAAGGAATTTTCTTCTCTGGGTCT 509 Query 94855 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 94914 || ||||| |||| ||| | || ||| || ||| |||||||| || || ||||| || Sbjct 508 TTTTGCGCAATTTTCTGGTTGAAAAAGAGATCTCTTATGCCAGGCCTTTGTTTCTCTAAT 449 Query 94915 GAGCTTATCTCTCGTGACGAGGGA 94938 ||| | ||||| | || |||||| Sbjct 448 GAGTTGATCTCAAGAGATGAGGGA 425 >seq10218 Length=314 Score = 102 bits (112), Expect = 9e-17 Identities = 140/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 9697 TCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTC 9756 ||| || ||||||||||||||||| |||| ||||||||| ||||| || ||| Sbjct 41 TCCAACCGCATCAATCTCATCAATAAAGATAATGCATGGTGAATTTTTCTTCGCAGTTTC 100 Query 9757 AAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGC 9816 ||| | || |||||||| || || ||||||||||||||||| ||||| | || | Sbjct 101 AAACATGTCACGTACACGAGATGCACCAACACCAACAAACATCTCAACAAAATCTGAACC 160 Query 9817 GGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCT 9875 ||| || | | ||| || || || | |||||| ||||| || || || | | || | Sbjct 161 AGAA-ATAGTAAAGAATGGAACCTTGGCTTCACCAGCAATTGCGCGCGCCAATAATGTTT 219 Query 9876 TACCCGTACCTGG 9888 |||| |||||||| Sbjct 220 TACCTGTACCTGG 232 >seq89378 Length=630 Score = 93.3 bits (102), Expect = 5e-14 Identities = 201/295 (68%), Gaps = 18/295 (6%) Strand=Plus/Minus Query 9524 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9583 |||||||| || || || || | | || | ||| | | ||| ||| || ||||| Sbjct 295 CGATCAAAACGTCCAGGGCGCAACAATGCTTTATCTAACACATCGGGGCGGTTAGTCGCA 236 Query 9584 GCGATGACAACAATACCTGTTTCATTA---TCAAAACCATCCATCTCTGTCAAAAGTTGG 9640 || ||||||| ||| ||| ||||| |||||||||||||| ||| || ||||| Sbjct 235 GCAATGACAATAATGCCT---TCATTGCCTTCAAAACCATCCATTTCTACCAGCAGTTGA 179 Query 9641 TTAATAGTTTGTTCCCGTTCATCATT--CGCTGGCAT-ACCACCAGCACTGCGTTGCTTT 9697 || | ||||| || || |||||||| | | | ||| |||||| || || || Sbjct 178 TTGAGGGTTTGCTCACGCTCATCATTACCACCGCCATGGCCACCACCA---CGGTGACGA 122 Query 9698 CCCACGGCATCAATCTCATCAATGAAGACGATGCATGG---TTGATTTTCGCGAGCGACT 9754 || ||||| || |||||||| || || | ||||| || || |||| | || Sbjct 121 CCTACGGCGTCGATCTCATCGATAAATATAATGCAGGGCGCCTGCTTTTTG---GCTTGC 65 Query 9755 TCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGT 9809 ||||| | ||||| || || || |||||||| |||||||| || ||||||| Sbjct 64 TCAAACATGTCCCGAACCCGGGAAGCACCCACACCCACAAACATTTCTACAAAGT 10 >seq68204 Length=1977 Score = 84.2 bits (92), Expect = 3e-11 Identities = 195/286 (68%), Gaps = 16/286 (6%) Strand=Plus/Minus Query 9611 TCAAAACCATCCATCTCTGTCAA-AAGTTGGTTAATAGTTTGTTCCCGTTCATCATT--C 9667 ||||||||||||||||| | ||| | ||||| | ||||| || || |||||||| | Sbjct 1976 TCAAAACCATCCATCTC-GACAAGCAACTGGTTGAGCGTTTGCTCGCGCTCATCATTGCC 1918 Query 9668 GCTGGCATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACG 9727 || | | | ||| || | ||| || || || ||||| |||||||| || |||| | Sbjct 1917 GCCGCC--AAGACCGGCGCCGCGATGACGACCTACAGCATCGATCTCATCGATAAAGATG 1860 Query 9728 ATGCATGG----TTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCC 9783 || || || || |||| || || ||||| | || || ||||| | || || Sbjct 1859 ATACAAGGCGCATTCTTTTTGGCTTGC----TCAAACATGTCGCGCACACGGCTTGCACC 1804 Query 9784 CACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAG 9842 || || |||||||| |||||||||| | | ||| |||| | ||| || || | | Sbjct 1803 AACCCCGACAAACATTTCCACAAAGTCAGAACCTGAA-ATTGTAAAGAACGGTACTTCGG 1745 Query 9843 ATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9888 || || || | | || || || ||||| ||||| |||||||| Sbjct 1744 CCTCGCCAGCGACAGAGCGCGCAAGCAGAGTTTTACCAGTACCTGG 1699 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582464998964480