Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_028099.1 Length=122522 Score E Sequences producing significant alignments: (Bits) Value seq70280 107 2e-18 >seq70280 Length=1721 Score = 107 bits (118), Expect = 2e-18 Identities = 383/587 (65%), Gaps = 29/587 (5%) Strand=Plus/Plus Query 111721 TGATTTAAATAAACATGCGCATCTCCTATACAATGGATCAATTCCCAAGGCTCCAAACCA 111780 |||||| || ||||| || ||||||| | || || ||||| | || | || Sbjct 236 TGATTTTTGTATACATGAGCGTCTCCTAAAGTGTGAATGAATTCACCTCTTTCAAGGCCT 295 Query 111781 GTGATGTGTGCAATCATGTATGTGAGTAGACTGTAACTAGCAATGTTAAATGGCACACCT 111840 || || ||||||||| | ||||||||||| |||||||| || || ||||| || ||| Sbjct 296 CAAATCTGAGCAATCATGCAGGTGAGTAGACTATAACTAGCTATATTGAATGGTACTCCT 355 Query 111841 AGGCCCATATCTCCCGATCTTTGATATAGCTGACATGATAGTTTATTTT--GTGAC-ACA 111897 || || ||||| | |||||||| | |||||| |||| | |||||| || | ||| Sbjct 356 AGACCAATATCACAACTCCTTTGATACATCTGACAGGATAATCTATTTTTAGTATCAACA 415 Query 111898 TAAAATTGACAAAGTACATGACAAGGAGGCAATGCCATCCCATTCATAAAGGGTCC---- 111953 || || || || | | ||| ||||| || | |||||| ||| | ||| | Sbjct 416 TAGAACTGGCAGATGATATGGCAAGGTGGTAGAGCCATC---TTCTTTAAGTCAGCAACA 472 Query 111954 --CCATGCACACATGATCATCCTTCTGCTGTAGCGATTATGTTCAATGTCGTGTATGACA 112011 ||||||| | || || |||| ||| |||| | || | ||| | || | | Sbjct 473 TTCCATGCATTAAGAATAATTCTTCGACTGGTTGGATTCTCTTTGAGGTCTTTAATAATA 532 Query 112012 TTCAAGAGCTGGTCTATCCCTTTACCAGTATAATCCGCCTGACATCCAGT-GTATGTT-- 112068 ||| | || || | |||| || ||| || | || ||| ||| ||| || Sbjct 533 TTCTTAATTTGATCGACTCCTTGTCCTTCATAGTCATCATG-CAT--AGTCTTATATTCA 589 Query 112069 GCCCCATAGTGTCTCCATTGGAATCCATAAATAGGCCCCAGATCTCCCGGGGCTGTATCT 112128 || ||| |||||||||||||||| ||||| | || || ||||| || || | ||| Sbjct 590 GCTCCAAAGTGTCTCCATTGGAAACCATATACTGGTCCAAGATCACCTTCTTCTCTTTCT 649 Query 112129 GGAAATTGCTCTCTATTCAACAAA-TCACTTCTAATATGAGGATTCCAAATCTTCACTCC 112187 | ||| | | | | |||| ||| || ||| | | || ||| || || | | Sbjct 650 GTAAA-TCCATTGTTATCAAGAAATTCTCTTGAGCCGTTACCATCCCAGATTTTAA---C 705 Query 112188 TTTAGATGATAACTC-----TCTTGCATTTGTGGATCCTCTAATAAACCATAGCAATTCT 112242 |||| | | ||||| | ||| |||||| ||||||| ||||||| | ||| Sbjct 706 TTTATTTCA-AACTCAGGGTTGTTGAATTTGTTTCCCCTCTAAGGAACCATAAGAGCTCT 764 Query 112243 TCCACAACCCCTTTCCAGTACACTCTTTTAGTAGTTAGCAGTGGAAA 112289 || ||||| || |||||||| || ||||||||| || || || || Sbjct 765 TCTACAACTCCCTTCCAGTATACGTCTTTAGTAGTGAGGAGAGGGAA 811 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 391424198687776