Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq59922 104 3e-17 seq75063 96.9 4e-15 >seq59922 Length=6033 Score = 104 bits (114), Expect = 3e-17 Identities = 138/191 (72%), Gaps = 3/191 (2%) Strand=Plus/Plus Query 59922 GTTAAACAAAAAGCAGAATGGGCCATGCAGTGGATGAGTCCTGGAGCATCATTTGCACAA 59981 ||||| ||||||||| ||||| ||| ||||| | || || |||||||||| || Sbjct 645 GTTAAGGTAAAAGCAGATTGGGCTTTGCGTTGGAT---TGATGAAGGATCATTTGCAGAA 701 Query 59982 CGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATT 60041 | || | || |||||| ||||||||||| |||||||| || || |||||| | ||| Sbjct 702 AGACTTGTTGCATTTGCAGCAGTGGAAGGAATTTTCTTCTCAGGTTCTTTCTGTTCAATT 761 Query 60042 TTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCC 60101 | |||| | || || | || || ||||| || || |||||| |||||| | || || Sbjct 762 TACTGGTTGAAGAAAAGAGGACTGATGCCAGGGCTTTCTTTCTCTAACGAGTTAATCTCA 821 Query 60102 CGGGACGAGGG 60112 | ||||| || Sbjct 822 AGAGACGAAGG 832 >seq75063 Length=1318 Score = 96.9 bits (106), Expect = 4e-15 Identities = 118/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 59970 TCATTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCG 60029 |||||||| || | | || || ||||| || || |||||||| ||||||||||| || Sbjct 568 TCATTTGCTGAAAGATTGATTGCGTTTGCTTGTGTAGAAGGAATTTTCTTCTCTGGGTCT 509 Query 60030 TTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAAC 60089 || || || ||||||||| | |||||| | || ||||| ||||| ||||||| || Sbjct 508 TTTTGCGCAATTTTCTGGTTGAAAAAGAGATCTCTTATGCCAGGCCTTTGTTTCTCTAAT 449 Query 60090 GAGCTGATTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGC 60130 ||| |||| || | || ||||| | ||| || ||||| Sbjct 448 GAGTTGATCTCAAGAGATGAGGGATTACATACTGACTTTGC 408 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547776392762880