Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq59179 91.5 2e-13 seq25765 84.2 2e-11 seq28172 82.4 8e-11 >seq59179 Length=18447 Score = 91.5 bits (100), Expect = 2e-13 Identities = 254/387 (66%), Gaps = 11/387 (3%) Strand=Plus/Plus Query 158968 CCAGTCGCAATCACAAAGTCCTCTGGACCGGGCTGTTGGAGCATGAGCCACATGGCCTCG 159027 || || ||||| ||||| || || || | |||||| ||||| | |||| ||| Sbjct 16419 CCTGTAGCAATAACAAAATCTTCAGGGACATCCTGTTGAAGCATTAACCACTGCATCTCT 16478 Query 159028 ACGTAATCCTGCGCGTGACCCCAGTCGCGCTTGGCATCCATGTTCCCGAGCTCGATGACT 159087 |||||||| | ||||| ||||| || || ||||| | |||||||| | | | Sbjct 16479 ACGTAATCGCGTGCGTGCCCCCAATCTCGTTTGGCCGATAAATTCCCGAGACTTAACAGT 16538 Query 159088 TTT------CCAGACTTTTTCCACTCAGCCAGACCGAGCGTGATCTTGCGCGTCACAAAC 159141 ||| ||| ||| ||| || || | ||||| || | |||||||| Sbjct 16539 TTTTGTGTACCAAGCTTGATCCGT---GCGAGCGCTCTTGTGATTTTTCTAGTCACAAAT 16595 Query 159142 -TCTGCTCCGCGCCGTTCCGACTCATGGTTAAACAGAATGCCGGTACAAGCGAACAGGTT 159200 ||| | |||||| | ||| |||||||| ||||| || || |||| ||| ||| Sbjct 16596 GTCT-CGCCGCGCAGAGGCGATTCATGGTTGAACAGGATACCATTACACGCGTACAACCC 16654 Query 159201 ATAGGACTCGCGGTAATTTTTAGTTATCCAGTATCCAAAGAGCTTGGAGACGCCGTATGG 159260 ||||| ||||||||||| || |||||||| || | | || | || | || || Sbjct 16655 ATAGGCTTCGCGGTAATTAACTGTAATCCAGTAGGCATACATTTTTGCAACCGCATAGGG 16714 Query 159261 ACTCCGAGGATAAAATGGTGTCCCCTCATTTTGAATTGGTTCCTGAACCTTTCCAAACAT 159320 ||| || |||||||||||||| || |||||| | ||| || ||| ||| ||| Sbjct 16715 ACTGCGCGGATAAAATGGTGTTGTTTCCTTTTGAGGAGTTTCTTGCACCAACCCATACAA 16774 Query 159321 TTCACTCGTCCCAGCCTGATAAAATTT 159347 |||| || || ||||| ||||| Sbjct 16775 TTCAGAGGTTGAGGCTTGATAGAATTT 16801 >seq25765 Length=261 Score = 84.2 bits (92), Expect = 2e-11 Identities = 130/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 124712 CTCGTGGTTGAACAGAATGCCAGTACACGCAAACATCCCGTACGACTCGCGGTAGTTTTT 124771 ||||||||||||||| ||||| | || ||| |||| ||||| | || |||||||| Sbjct 227 CTCGTGGTTGAACAGGATGCCGTTGCAGGCATACATGCCGTAGGCTTCACGGTAGTTGAC 168 Query 124772 CGTCATCCAATACCCAAAGAGCTTGGACACGCCATAGGGGCTTCGGGGGTAGAATGGGGT 124831 || ||||| || | | || |||| ||| |||| || |||||||| || || || Sbjct 167 GGTGATCCAGTAGGAATACAGTTTGGCCACCGCATAAGGCGAGCGGGGGTAAAACGGCGT 108 Query 124832 GTTTTCATTTTGGGTAGGTTGCTGAATCTTCCCAAACATCTCCGAAGTACCCGCCTGATA 124891 | | || ||||| | | || ||| | || ||| || |||||| |||||||| Sbjct 107 GGTCTCTTTTTGCGGGGTTTCCTGCACAAGGCCGTACAGTTCGGAAGTAGAGGCCTGATA 48 Query 124892 GAATTT 124897 |||||| Sbjct 47 GAATTT 42 >seq28172 Length=256 Score = 82.4 bits (90), Expect = 8e-11 Identities = 120/166 (72%), Gaps = 3/166 (2%) Strand=Plus/Minus Query 124740 GCAAACATCCCGTACGACTCGCGGTAGTTTTTCGTCATCCAATACCCAAAGAGCTTGGAC 124799 ||||| || || || || || || |||||| ||||||||| | | | ||||||||| Sbjct 252 GCAAAAATGCCATAGGATTCTCGATAGTTTACCGTCATCCAGTGCGCGTAGAGCTTGGCG 193 Query 124800 ACGCCATAGGGGCTTCGGGGGTAGAATGGGGTGTTTTCATTTTG-GGTAGGTTGCTGAAT 124858 | |||||||||||| || || ||||| || || | ||| ||||| || | | | ||| Sbjct 192 ATGCCATAGGGGCTGCGTGGATAGAAGGGCGTATCTTCGTTTTGCGGCATGCT-CTGGGC 134 Query 124859 CTTCCCAAACATCTCCGAAGTACCCGCCTGATAGAATTTGAATTTT 124904 || || ||||| || || || ||||||||||| ||||||| Sbjct 133 TTTGCCGAACATTTCAGACGTGGAAGCCTGATAGAA-ACGAATTTT 89 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546469378489600