Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq108602 134 2e-26 seq19544 116 4e-21 seq59922 105 8e-18 seq59179 105 8e-18 seq97248 100 3e-16 seq11290 100 3e-16 seq87644 91.5 2e-13 seq44811 91.5 2e-13 seq14831 91.5 2e-13 seq75063 89.7 6e-13 seq25765 89.7 6e-13 >seq108602 Length=371 Score = 134 bits (148), Expect = 2e-26 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| |||||||| ||||| ||||| || || || || || | || ||||| | Sbjct 348 AATGCAGATCTTTGTTAAGACTCTTACTGGAAAAACCATCACCTTAGATGTTGAACAATC 289 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | ||| | ||| | ||| |||| ||||| || || ||||||||||| |||||||| Sbjct 288 TGACACCATCGACAATGTCAAGACTAAGATTCAAGATAAAGAGGGAATTCCACCAGACCA 229 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||| | || || |||||||| || ||| | || || | | | || ||| |||| ||||| Sbjct 228 ACAGAGACTTATCTTTGCTGGAAAACAATTAGAAGACGGTAGAACTCTATCAGATTATAA 169 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 | ||||| ||||| ||||| ||| | ||| | | ||| | || ||| Sbjct 168 CATTCAAAAAGAATCTACTCTCCATTTGGTCCTCAGACTTAGAGGAGGA 120 >seq19544 Length=280 Score = 116 bits (128), Expect = 4e-21 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| | || || ||||| ||||| ||||| || || | Sbjct 276 ATGCAGATCTTTGTAAAGACCTTGACTGGAAAGACCATTACCCTTGACGTCGAACAATCC 217 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| ||| | ||| |||| ||||| || ||||| || || || ||||| || Sbjct 216 GATACTATTGATAATGTAAAGACTAAGATTCAAGATAAGGAAGGTATCCCACCAGATCAA 157 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || | | || ||||| || |||||| | || |||| | ||| || | || || ||| Sbjct 156 CAAAGATTGATCTTTGCAGGAAAGCAATTAGAAGATGGAAGAACCTTATCTGATTACAAT 97 Query 27586 GTCCAAAAGGAATCCACTCTTCAT 27609 |||| ||||| |||||||||||| Sbjct 96 ATCCAGAAGGAGTCCACTCTTCAT 73 >seq59922 Length=6033 Score = 105 bits (116), Expect = 8e-18 Identities = 543/854 (64%), Gaps = 14/854 (2%) Strand=Plus/Minus Query 80908 GACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCGACGATTTCCGTGCAC 80967 || |||| || || || || ||||| || | | || |||| | || || || || Sbjct 2594 GAAGCCAAGTTACAAACTGCAACCTCATCTGGCGCAGTGTACTCTATAATCTCAGTACAT 2535 Query 80968 AAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGTCC 81027 || || ||||||||||||||||| | ||||| |||||||| || | ||| ||| || Sbjct 2534 AAGTTTGAAGACTTAATTGTACCTAAGTTTTGTTGGTTTGATTTTGAGTTTGCAGCATCT 2475 Query 81028 TTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCAAATC 81087 ||||| ||||||| || ||||| ||||| | || || | | ||| | ||||| Sbjct 2474 TTGTACAACATGTAAGGAGTACCTGTCTCAATTTGAGATTCTAAGATTTTGAACCAAAGG 2415 Query 81088 TCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATACTTGGCGTAAGCTTCG 81147 || | || |||| || | ||| ||| | | ||||| | ||| | Sbjct 2414 TCTTGTGCTTTGATTGTTTTTCTTCCTTTCCCTGCTTTTTCGTACTTCGTGTACAACGCT 2355 Query 81148 TCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACATCAGGTGC 81207 ||||| | |||| ||| | || | || ||||||| |||| || ||||| | | Sbjct 2354 TCGAATTCAGCACTGTGCACATCTGAAAGACCTGGGCATTCGTGCGGACACATTAAAGTC 2295 Query 81208 CAGTCGGTGTCGTTCTCT-ACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGGCGGTGAA 81266 || || | |||| | ||| | |||||| || || | ||| | ||| || Sbjct 2294 CACTCTCCATT-TTCTTTCACACGTTGCATGAATAAATCTGGAACCCACAAAGCGTAAAA 2236 Query 81267 CAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGAAAGTCCAT 81326 | || | | ||| || | ||| || || ||| || | ||||| | Sbjct 2235 TAAATCTCTTGCTCTTTGCTCTTCTTTACCGTGATTTTTCTTCAAGTCTAAGAAGTCAAA 2176 Query 81327 GATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGACCCCTTGCGA---CGGCCACC 81383 | || |||||||| ||||||| |||| |||| || || || || | ||||| Sbjct 2175 TACATCAGCATGCCAAGGCTCCAAGTACATTGCGAAAGAACCTTTACGTTTTCCTCCACC 2116 Query 81384 CTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGATACCATCTGA 81443 || | ||||| | ||||| |||||||||| | ||||| || | |||||| | || Sbjct 2115 TTGATCTACGTATCTAGCAGTATCGTTAAATACTCTTAACATTGGAACGATACCGTTAGA 2056 Query 81444 CTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCACCTTGCTGATTGAAAGACC 81503 |||||| || || ||| || || | || || | ||| || | | || Sbjct 2055 AGCACCGTTTGTTCCTTTGATGTATGAACCTGTCGCACGGATGTTGTGCATAGCCAATCC 1996 Query 81504 GATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCATAAATTCCCTC 81563 || ||||| | | | || ||||||||||| | || | || ||||||||||| || Sbjct 1995 AATTCCACCAGCTGATTGAGAGATCTGAGCACATTGTTTTAATGTGTCATAAATTCCTTC 1936 Query 81564 GATGCTATCTTTTTTCA-TGTCAAGCAAGAAACAGCTTGACATCTGAGGGCTTTTTGAG- 81621 || ||||||| |||| ||| || | |||||| |||||| || || |||| | | Sbjct 1935 AATACTATCTTCCTTCATTGTTAA-AAGGAAACAAGATGACATTTGTGG--TTTTGGCGT 1879 Query 81622 -CCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGACATCAGGTCATA 81680 || | || |||| ||||| || ||||| |||| | | | |||||| | || || Sbjct 1878 TCCAGAGTTAAACAACGTTGGTGTTGCGTGTGTGAACCATCCTTCTGACATTAAGTTGTA 1819 Query 81681 GGT-TTCCTTGACGCGTGGAATATCGTCACCGTGAATACCGATAGCTACACGCATAAACA 81739 || || ||| | || | ||||| | |||||| || | || |||||||| |||| Sbjct 1818 TGTCTTAATTGCAGAGTCG-ATATCTTTTTTGTGAATTCCAACAGAAACACGCATCAACA 1760 Query 81740 TGTACTG-GGGCGT 81752 | | || |||||| Sbjct 1759 TTTGTTGTGGGCGT 1746 Score = 91.5 bits (100), Expect = 2e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 64738 GTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTCTGGCTAAAAAAGCGGGGC 64797 ||||||||||||||||| || || || |||||||| |||| |||| | || || | || Sbjct 723 GTGGAAGGAATTTTCTTCTCAGGTTCTTTCTGTTCAATTTACTGGTTGAAGAAAAGAGGA 782 Query 64798 CTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGGGACGAGGG 64847 ||||||||||| || || || || |||||| | ||||| | ||||| || Sbjct 783 CTGATGCCAGGGCTTTCTTTCTCTAACGAGTTAATCTCAAGAGACGAAGG 832 >seq59179 Length=18447 Score = 105 bits (116), Expect = 8e-18 Identities = 255/380 (67%), Gaps = 11/380 (3%) Strand=Plus/Minus Query 24758 GGTGCAGGAGACGCCACAGTCGGAGACCACTCCATTTTATCCGCGAAGCCCGTATGGGGT 24817 |||||| || || || || ||| || || |||||||||||||| || || |||| ||| Sbjct 16763 GGTGCAAGAAACTCCTCAAAAGGAAACAACACCATTTTATCCGCGCAGTCCCTATGCGGT 16704 Query 24818 CTCAAAGGTGTTCGCGTACTGGATAACCAAGAACTACCGTGAGGCCCATGGGATATATGC 24877 |||| ||| || |||||||| || || ||||| || ||| ||||| | || || Sbjct 16703 TGCAAAAATGTATGCCTACTGGATTACAGTTAATTACCGCGAAGCCTATGGGTTGTACGC 16644 Query 24878 ATGCAACGGAATTCTGTTCAACCATGAGTCGGAGCGTCGGGGACCTGA-ATTTGTTACAC 24936 || || || || |||||||||||||| ||| | || || | || |||||| || Sbjct 16643 GTGTAATGGTATCCTGTTCAACCATGAATCGCCTCTGCGCGG-CGAGACATTTGTGACTA 16585 Query 24937 GAAAGATTACTCTTGGTATTGACCATTGGATCAAGACAAGGGCAC-----CTATTGAG-C 24990 |||| || || | | | || |||||||| | ||| || || || | Sbjct 16584 GAAAAATCACAAGAGCGCTCG--CA-CGGATCAAGCTTGGTACACAAAAACTGTTAAGTC 16528 Query 24991 TGGGAAACCTAGATGCCAAACGTGATTGGGGGCATGCAGCCGACTACGTCGACGCCATGT 25050 | || || || |||||||| ||||||||||| ||| ||| ||||| || || Sbjct 16527 TCGGGAATTTATCGGCCAAACGAGATTGGGGGCACGCACGCGATTACGTAGAGATGCAGT 16468 Query 25051 GGCGCATGCTCCAACAGAATAAGCCAGAGGATTTTGTGATCGGCACCGGTCAGACGCATT 25110 || ||||| |||||| || || || |||||||| || | || ||| | | ||| Sbjct 16467 GGTTAATGCTTCAACAGGATGTCCCTGAAGATTTTGTTATTGCTACAGGTGTGCAGTATT 16408 Query 25111 CTATCAGGGATTTTATTAAT 25130 | | | |||||| ||||| Sbjct 16407 CCGTTCGTGATTTTGTTAAT 16388 >seq97248 Length=461 Score = 100 bits (110), Expect = 3e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| || ||||| | || || ||||| ||||| | || |||||| | Sbjct 183 ATGCAAATCTTCGTAAAGACTTTAACTGGTAAGACAATTACCTTAGATGTTGAGCAATCA 242 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| || | ||| |||| ||||| ||||| || || || || ||||| || Sbjct 243 GATACTATTGACAACGTCAAGACTAAGATTCAAGACAAAGAAGGCATCCCACCAGATCAA 302 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | | || || ||||| |||||| | || |||| | || || | || || || Sbjct 303 CAGAGATTGATCTTCGCTGGAAAGCAATTAGAAGATGGAAGAACATTATCTGATTACAAC 362 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTC 27615 | || || || |||||||||||| | ||| Sbjct 363 ATTCAGAAAGAGTCCACTCTTCATTTGGTC 392 >seq11290 Length=309 Score = 100 bits (110), Expect = 3e-16 Identities = 149/208 (72%), Gaps = 10/208 (5%) Strand=Plus/Minus Query 24744 GAGATGTTTGGCAAGGTGCAGGAGACGCCACAGTCGGAGACCACTCCATTTTATCCGCGA 24803 ||| | || |||||||| || || ||||| ||||| ||||| || ||||||||| || Sbjct 253 GAGCTTTTCGGCAAGGTTCACGAAGTACCACAATCGGAAACCACGCCGTTTTATCCGAGA 194 Query 24804 AGCCCGTATGGGGTCTCAAAGGTGTTCGCGTACTGGATAACCAAGAACTACCGTGAGGCC 24863 || |||| || |||| | | || |||||||| || ||||||||| ||||| Sbjct 193 TCGCCTTATGCCGTGGCAAAACTTTATGCCTACTGGATGACAGTGAACTACCGCGAGGCG 134 Query 24864 CATGGGATATATGCATGCAACGGAATTCTGTTCAACCAT--GAGTCGGAGCGTCGGGGAC 24921 |||| | |||| | |||||| || ||||||||||| ||||| || | |||||| Sbjct 133 TATGGTTTTCATGCCTCCAACGGCATCATGTTCAACCATGAGAGTCCGATC--CGGGGA- 77 Query 24922 CTGAA---TTTGTTACACGAAAGATTAC 24946 ||| |||||||| || ||||| || Sbjct 76 --GAAACCTTTGTTACCCGCAAGATCAC 51 >seq87644 Length=678 Score = 91.5 bits (100), Expect = 2e-13 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 27488 CTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTA 27547 |||||||||| || || || |||||||||||||| || || | |||| ||||| || | Sbjct 232 CTAAAATTCAAGATAAAGAAGGAATTCCTCCAGATCAACAAAGATTAATCTTTGCCGGAA 291 Query 27548 AGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTC 27607 ||||| | || |||| | ||| || | ||||| ||| | || || ||||| || |||| Sbjct 292 AGCAATTAGAAGATGGAAGAACCTTATCTGACTACAATATTCAGAAAGAATCTACCCTTC 351 Query 27608 ATCTAGTC 27615 |||| ||| Sbjct 352 ATCTCGTC 359 >seq44811 Length=222 Score = 91.5 bits (100), Expect = 2e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||||| || | ||| |||| ||||||||||| || |||||||| ||||| || Sbjct 213 GATACCATTGACAACGTTAAGACTAAGATTCAGGACAAAGAAGGAATTCCACCAGATCAA 154 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || | || || |||||||| |||||| | || || | | | || || | ||||| || Sbjct 153 CAAAGACTTATCTTTGCTGGAAAGCAATTGGAAGACGGTAGAACTCTCTCCGACTACAAC 94 Query 27586 GTCCAAAAGGAATCCACTCTTCA 27608 | || |||||||| ||||| || Sbjct 93 ATTCAGAAGGAATCTACTCTCCA 71 >seq14831 Length=294 Score = 91.5 bits (100), Expect = 2e-13 Identities = 103/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537 ||| | ||| |||||||||| ||||| || || || ||||||||||| ||| | || || Sbjct 9 AATATTAAGACTAAAATTCAAGACAAAGAAGGCATCCCTCCAGACCAACAGAGACTGATC 68 Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAA 27597 ||||| || || || || |||| | ||| |||||||||| ||| ||||||| || Sbjct 69 TTTGCAGGAAAATGCCTTGAAGATGGAAGAACCTTAGCAGACTACAATATCCAAAAAGAG 128 Query 27598 TCCACTCTTCATCTAGTC 27615 || ||| | || || ||| Sbjct 129 TCTACTATCCACCTTGTC 146 >seq75063 Length=1318 Score = 89.7 bits (98), Expect = 6e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 64726 GCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTCTGGCTA 64785 || ||||| ||||| |||||||||||||| |||||||| || || | ||||||||| | Sbjct 547 GCGTTTGCTTGTGTAGAAGGAATTTTCTTCTCTGGGTCTTTTTGCGCAATTTTCTGGTTG 488 Query 64786 AAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGGGACGAG 64845 |||||| | || |||||||| || | || || || ||| ||||||| | || ||| Sbjct 487 AAAAAGAGATCTCTTATGCCAGGCCTTTGTTTCTCTAATGAGTTGATCTCAAGAGATGAG 428 Query 64846 GG 64847 || Sbjct 427 GG 426 >seq25765 Length=261 Score = 89.7 bits (98), Expect = 6e-13 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 24759 GTGCAGGAGACGCCACAGTCGGAGACCACTCCATTTTATCCGCGAAGCCCGTATGGGGTC 24818 |||||||| || || || |||||||| || ||||| || || || |||| ||| Sbjct 81 GTGCAGGAAACCCCGCAAAAAGAGACCACGCCGTTTTACCCCCGCTCGCCTTATGCGGTG 140 Query 24819 TCAAAGGTGTTCGCGTACTGGATAACCAAGAACTACCGTGAGGCCCATGGGATATATGCA 24878 | || ||| | |||||||| ||| ||||||||||| ||| | || || ||||| Sbjct 141 GCCAAACTGTATTCCTACTGGATCACCGTCAACTACCGTGAAGCCTACGGCATGTATGCC 200 Query 24879 TGCAACGGAATTCTGTTCAACCATGAG 24905 |||||||| || ||||||||||| ||| Sbjct 201 TGCAACGGCATCCTGTTCAACCACGAG 227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 569532268490240