Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq97248 120 3e-22 seq108602 107 2e-18 seq44811 87.8 2e-12 >seq97248 Length=461 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || ||||| ||| | || || ||| | ||||| | || || || | || Sbjct 183 ATGCAAATCTTCGTAAAGACTTTAACTGGTAAGACAATTACCTTAGATGTTGAGCAATCA 242 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | ||||| || |||||||||||||||||||| ||||| |||||| Sbjct 243 GATACTATTGACAACGTCAAGACTAAGATTCAAGACAAAGAAGGCATCCCACCAGATCAA 302 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || || | ||| || || ||||| ||||| | || | || ||||||||| Sbjct 303 CAGAGATTGATCTTCGCTGGAAAGCAATTAGAAGATGGAAGAACATTATCTGATTACAAC 362 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGT 27196 ||||| || ||||| || | |||||||| Sbjct 363 ATTCAGAAAGAGTCCACTCTTCATTTGGT 391 >seq108602 Length=371 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || ||||| || || || | || || | || || |||| || Sbjct 347 ATGCAGATCTTTGTTAAGACTCTTACTGGAAAAACCATCACCTTAGATGTTGAACAATCT 288 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | ||||| || |||||||| ||||| || || ||||| || ||| Sbjct 287 GACACCATCGACAATGTCAAGACTAAGATTCAAGATAAAGAGGGAATTCCACCAGACCAA 228 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | || || |||||||| |||||| || || | || ||||| ||| Sbjct 227 CAGAGACTTATCTTTGCTGGAAAACAATTAGAAGACGGTAGAACTCTATCAGATTATAAC 168 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGT 27196 |||||||| || || || | |||||||| Sbjct 167 ATTCAAAAAGAATCTACTCTCCATTTGGT 139 >seq44811 Length=222 Score = 87.8 bits (96), Expect = 2e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 27039 GAACCGTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCA 27098 |||| ||| || | ||||| | || || || ||||| ||||||||||| || ||| Sbjct 222 GAACAGTCAGATACCATTGACAACGTTAAGACTAAGATTCAGGACAAAGAAGGAATTCCA 163 Query 27099 CCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCC 27158 || |||||||| | | || | || || || |||||||||||| || || | ||| Sbjct 162 CCAGATCAACAAAGACTTATCTTTGCTGGAAAGCAATTGGAAGACGGTAGAACTCTCTCC 103 Query 27159 GATTACAACATTCAAAAGGAGTCGACCTTACATTTGGT 27196 || ||||||||||| ||||| || || | || ||||| Sbjct 102 GACTACAACATTCAGAAGGAATCTACTCTCCACTTGGT 65 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434324997335040