Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_028657.1 Length=60919 Score E Sequences producing significant alignments: (Bits) Value seq59983 111 6e-20 seq46611 93.3 2e-14 >seq59983 Length=5794 Score = 111 bits (122), Expect = 6e-20 Identities = 209/305 (69%), Gaps = 2/305 (1%) Strand=Plus/Plus Query 7278 AGGTGTTAACAAAGTCATTCTGGTTGGTAACGTCGGTGGTGACCCGGAAACCCGCTACAT 7337 |||||| |||||||| ||| | |||||||| | ||| ||||| ||| || || Sbjct 39 AGGTGTAAACAAAGTAATTATCGTTGGTAATTTGGGTAACGACCCAGAAGTTCGTTATTC 98 Query 7338 GCCCAACGGCAATGCGGTGACCAACATCACCCTCGCCACCAGCGAGAGCTGGAAGGACAA 7397 | ||||||| ||| | | ||||||| | | || || || | ||||| ||||| Sbjct 99 GAACAACGGCGCCGCGATTGCAAACATCAGCGTAGCAACATCGGAAAATTGGAAAGACAA 158 Query 7398 GCAGACCGGCCAGCAACAGGAACGCGCCGAGTTCCACCGCGTGGTGTTCTTCGGTCGCCT 7457 | | |||||| ||| || || ||| |||||| || | | || ||| |||||| Sbjct 159 GAACACCGGCGAGCGCCAAGAGCGCACCGAGTGGCATAGAATCACCTTGTTCAATCGCCT 218 Query 7458 -GGCGGAGATCGCCGGCGAGTACCTGCGCAAGGGTTCCCAGGTCTACGTCGAAGGCAGCC 7516 |||| || | |||||||||||||| ||||| || |||||||| ||||||||| Sbjct 219 TGGCGAAG-TGGCCGGCGAGTACCTTAAAAAGGGCTCAAAGGTCTACATCGAAGGCAAGT 277 Query 7517 TGCGCACCCGCAAGTGGCAGGCTCAGGACGGCCAGGACCGATACACCACCGAGGTAATCG 7576 | | ||||| || ||||||| || | | || | || || ||| | ||||| | || | Sbjct 278 TACAAACCCGAAAATGGCAGGATCCGCAGGGTAATGATCGTTACTCAACCGATATTATTG 337 Query 7577 TCGAC 7581 |||| Sbjct 338 CCGAC 342 >seq46611 Length=219 Score = 93.3 bits (102), Expect = 2e-14 Identities = 54/56 (96%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 14959 TGGTGCGGACGGAGAGACTCGAACTCTCACGCCTTGCGGCGCTGGAACCTAAATCC 15014 |||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| Sbjct 60 TGGTGCGGACGGAGAGACTCGAACTCTCACACCTTGCGGCACTGGAACCTAAATCC 5 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 194566679249344