Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_028683.1 Length=177643 Score E Sequences producing significant alignments: (Bits) Value seq31779 91.5 2e-13 seq59662 89.7 6e-13 >seq31779 Length=247 Score = 91.5 bits (100), Expect = 2e-13 Identities = 153/221 (69%), Gaps = 3/221 (1%) Strand=Plus/Plus Query 139363 TCTAAGCAAAGTTCGCGAGCCATTTCGAGCCCACGGTTTATGTCAAATGAGCCATTCAAT 139422 ||||| ||| || || || |||| | || | || |||||| | || | ||| Sbjct 26 TCTAATAAAAATTGACGGGCTTTTTCTAAGCCTAGATTGATGTCATAACTACCGTCCAAA 85 Query 139423 TCTGGGTCGTTAATGAAACCTTTCCAACCTACAGTTGTTCTTGGTTTCTCAAAATAAACA 139482 | |||||||| || |||||||||||||| || ||||||||||| || |||||||| || Sbjct 86 TGCGGGTCGTTGATTAAACCTTTCCAACCAACCGTTGTTCTTGGCTTTTCAAAATAGACG 145 Query 139483 CGCATAAC---CAAAAGAAGATTTGGAAATTGTTTTTGTACTTCGGCTAAACGTTCGCCG 139539 ||||| || ||| | | || | || || || | || | |||||| | | Sbjct 146 CGCATCACCATCAACAAATCATCCGATAAATGCTTACGGACAGCCAATAAACGCTTTGCA 205 Query 139540 TATTCGAGAGCAGCTTTAGGGTCATGAATTGAACAAGGGCC 139580 || || | | ||||||| | ||||||||| |||||||| || Sbjct 206 TACTCTAAACCAGCTTTTGTGTCATGAATAGAACAAGGCCC 246 >seq59662 Length=7096 Score = 89.7 bits (98), Expect = 6e-13 Identities = 156/224 (70%), Gaps = 6/224 (3%) Strand=Plus/Minus Query 139367 AGCAA-AGTTCGCGAGCCATTTCGAGCCCACGGTTTATGTCAAATGAGCCATTCAATTCT 139425 ||||| || |||||||| || | | || ||||| | ||| | ||||||| || Sbjct 4876 AGCAATAGATCGCGAGCGATGCCAATACCTTTGTTTACCTTAAACGTATCATTCAAATCC 4817 Query 139426 GGGTCGTTAATGAAACCTTTCCAACCTACAGTTGTTCTTGGTTTCTCAAAATAAACACGC 139485 || ||||| || | || |||||||| || || || | ||| || ||||| ||||| ||| Sbjct 4816 GGATCGTTTATCAGCCCCTTCCAACCGACGGTAGTGCGTGGCTTTTCAAAGTAAACTCGC 4757 Query 139486 ATAACCAAAAGAAGATT----TGGAAATTGTTTTTGTACTTCGGCTAAACGTTCGCCGTA 139541 ||||| | | | || | || | ||| || | |||||||||||| | |||| Sbjct 4756 ATAACGATGACTAAATCATCCTTTAACTCGTTCTTA-AGATCGGCTAAACGTGCAGCGTA 4698 Query 139542 TTCGAGAGCAGCTTTAGGGTCATGAATTGAACAAGGGCCTACAA 139585 ||| | || | || || |||||||||||||| ||||| |||| Sbjct 4697 TTCTAATGCCGACTTCGGATCATGAATTGAACACGGGCCAACAA 4654 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 567554171093760