Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_028696.2 Length=41338 Score E Sequences producing significant alignments: (Bits) Value seq84132 131 4e-26 seq90072 109 1e-19 seq76308 96.9 9e-16 >seq84132 Length=808 Score = 131 bits (144), Expect = 4e-26 Identities = 522/813 (64%), Gaps = 23/813 (3%) Strand=Plus/Minus Query 39828 AACAACGGCGAGGTACGCCCAGCGCTTACCCGTCCAGATATAGGTCACATCACCGCACCA 39887 ||| || || | || |||||||| | || |||||||||| ||||| ||||||||||| Sbjct 808 AACGACAGCCAAATAGGCCCAGCGTCTCCCGCTCCAGATATAAGTCACGTCACCGCACCA 749 Query 39888 CACCTGATTTGGCTCGGTCACGGCGAACTGCCGTTCAAGGTAGTTAGGGATAGCAACATG 39947 || | ||| ||||| || ||| |||||| || || || |||||| | || ||||| Sbjct 748 TACTTTATTCGGCTCCGTTACGTTGAACTGACGATCTAGTGTGTTAGGCACCGCCACATG 689 Query 39948 TTCATGACCACCACGTTTATACCGGTAAGTCGGCTGCTGACAGCTGACCAGCCCCAGCTC 40007 || || | | || || || ||| |||| ||||| || || | | | Sbjct 688 CTCCTGTCTTGCCTTCTTGTATTTGTGGCCAGGCAGCTGGCAGCTCACTAGTTCTAAGTA 629 Query 40008 TTTCATGAGTCTGCCAGCAAGCCAGCGCCCCATCTGGTAGCCTCTCTGG--GTTGCCATT 40065 |||||| || | | ||| | || | || || ||| |||||| ||| | || Sbjct 628 TTTCATTAGACGACTAGCCCTATAACGACTCAGCT--TAGTACCTCTGGCTGTTACGATC 571 Query 40066 GTGGCGATGCTTCTTGCTCCGGCAGAGCCGTGGCTGATGCCATGCAGTTCAAGTACCTGG 40125 || | | |||| ||||| || ||||||| ||| | || ||| || ||| Sbjct 570 TCAGCAAGGGTTCTCGCTCCCGCTGAGCCGTTGCTCTCGTCAAAAGCTTCCCTGACTTGG 511 Query 40126 CTGCGTAATACAGCCCGTCTGCCGTCTGGCTTTTCAGGACGGTTTTTCCAGTATTTGTAG 40185 || | | | | || | | |||||| ||| ||| ||| || || ||| Sbjct 510 CTATGCAGTTCGACCTGCTTAGGAGAAAGCTTTTTGCAACGCTTTGACCAATACTTATAG 451 Query 40186 CTGCTGCGATGGACCCCGAACACATGGCAGAGAGTGGCCACAGGATAACGCGCCCTGAGT 40245 |||||||||| || | || || | |||| | || | || | | | ||| | Sbjct 450 CTGCTGCGATTCACTTCAAAGACTTTGCAGGCTAGCGATACCGAATGGCTCTCTTTGACT 391 Query 40246 TTCCCGATTATCGAGAACTGTTCAGGGAGTCTGACATCAAGAGCGCGGTAGCCTTTTTTA 40305 | | | || || |||| ||| ||||| ||||||||||| |||||||||||||||| Sbjct 390 CTGTCAACTAACGCGAACCTCTCATCGAGTCGGACATCAAGAGAGCGGTAGCCTTTTTTA 331 Query 40306 ATATTTCATTTTCCATTTCAATACGTTGTAGCT--TTTTCCTGAGCTCACGGATTTCAAT 40363 |||| || || || ||| | | |||| |||| |||||||| || Sbjct 330 ATATCTCTTTCTCTTCTTCGACCCTCCTGAGCTGCCTTTC--AAGCTCACGTATCCGTTG 273 Query 40364 TTGTTCCGGGGTAATGGGGGAGGCTTTTGGTGTTTTGCCCTGCCGCTCATCACGTAATTG 40423 ||| |||||||| || || | | ||| || | | || | ||||| | || | || Sbjct 272 TTGGTCCGGGGTCATCGGTGTGCCTTGAGGGGCTACACCTTCTCGCTCCGCTCGAAGCTG 213 Query 40424 TTTCACCCATCGCGT-CATTGTGGAAAGGCCGACATCCATAGCGCTGGCTGCATCTGCCA 40482 |||||| | || |||||| || || || |||||||| |||||| ||| | Sbjct 212 GCGCACCCA-CTTGTCCATTGTTGATTTACCAACCCCCATAGCGTCGGCTGCTTCTCGAA 154 Query 40483 CGGTGTAATTCTGGTCAACGACCAGTTGAGCGGATTCGCGTTTAAACTCTGCGCTGAA-- 40540 | | | ||| ||||| |||| ||| || | ||| || | || |||| ||| || Sbjct 153 TTGAGCGACCCTGATCAACTACCAATTGGGCTGCTTCAAGTCTGAATTCTGGGCTAAAGG 94 Query 40541 -------ATTTCtttttttCATT-ATGGCACCTGTGTTGTTCT-GAGGTGAGCATATCAC 40591 ||||| | |||||| || ||||||||||||| | ||| ||| |||||||| Sbjct 93 TTGGTCTGGTTCTTCTCTTCATTGAT--CACCTGTGTTGTTGTGGAGATGATCATATCAC 36 Query 40592 CTCTGTTCAGGTGGCCAAATTCAGTAAACCACT 40624 ||| ||||||||||||||||| || ||||| Sbjct 35 CTCCTATCAGGTGGCCAAATTCACTATGCCACT 3 Score = 131 bits (144), Expect = 4e-26 Identities = 522/813 (64%), Gaps = 23/813 (3%) Strand=Plus/Minus Query 17203 AACAACGGCGAGGTACGCCCAGCGCTTACCCGTCCAGATATAGGTCACATCACCGCACCA 17262 ||| || || | || |||||||| | || |||||||||| ||||| ||||||||||| Sbjct 808 AACGACAGCCAAATAGGCCCAGCGTCTCCCGCTCCAGATATAAGTCACGTCACCGCACCA 749 Query 17263 CACCTGATTTGGCTCGGTCACGGCGAACTGCCGTTCAAGGTAGTTAGGGATAGCAACATG 17322 || | ||| ||||| || ||| |||||| || || || |||||| | || ||||| Sbjct 748 TACTTTATTCGGCTCCGTTACGTTGAACTGACGATCTAGTGTGTTAGGCACCGCCACATG 689 Query 17323 TTCATGACCACCACGTTTATACCGGTAAGTCGGCTGCTGACAGCTGACCAGCCCCAGCTC 17382 || || | | || || || ||| |||| ||||| || || | | | Sbjct 688 CTCCTGTCTTGCCTTCTTGTATTTGTGGCCAGGCAGCTGGCAGCTCACTAGTTCTAAGTA 629 Query 17383 TTTCATGAGTCTGCCAGCAAGCCAGCGCCCCATCTGGTAGCCTCTCTGG--GTTGCCATT 17440 |||||| || | | ||| | || | || || ||| |||||| ||| | || Sbjct 628 TTTCATTAGACGACTAGCCCTATAACGACTCAGCT--TAGTACCTCTGGCTGTTACGATC 571 Query 17441 GTGGCGATGCTTCTTGCTCCGGCAGAGCCGTGGCTGATGCCATGCAGTTCAAGTACCTGG 17500 || | | |||| ||||| || ||||||| ||| | || ||| || ||| Sbjct 570 TCAGCAAGGGTTCTCGCTCCCGCTGAGCCGTTGCTCTCGTCAAAAGCTTCCCTGACTTGG 511 Query 17501 CTGCGTAATACAGCCCGTCTGCCGTCTGGCTTTTCAGGACGGTTTTTCCAGTATTTGTAG 17560 || | | | | || | | |||||| ||| ||| ||| || || ||| Sbjct 510 CTATGCAGTTCGACCTGCTTAGGAGAAAGCTTTTTGCAACGCTTTGACCAATACTTATAG 451 Query 17561 CTGCTGCGATGGACCCCGAACACATGGCAGAGAGTGGCCACAGGATAACGCGCCCTGAGT 17620 |||||||||| || | || || | |||| | || | || | | | ||| | Sbjct 450 CTGCTGCGATTCACTTCAAAGACTTTGCAGGCTAGCGATACCGAATGGCTCTCTTTGACT 391 Query 17621 TTCCCGATTATCGAGAACTGTTCAGGGAGTCTGACATCAAGAGCGCGGTAGCCTTTTTTA 17680 | | | || || |||| ||| ||||| ||||||||||| |||||||||||||||| Sbjct 390 CTGTCAACTAACGCGAACCTCTCATCGAGTCGGACATCAAGAGAGCGGTAGCCTTTTTTA 331 Query 17681 ATATTTCATTTTCCATTTCAATACGTTGTAGCT--TTTTCCTGAGCTCACGGATTTCAAT 17738 |||| || || || ||| | | |||| |||| |||||||| || Sbjct 330 ATATCTCTTTCTCTTCTTCGACCCTCCTGAGCTGCCTTTC--AAGCTCACGTATCCGTTG 273 Query 17739 TTGTTCCGGGGTAATGGGGGAGGCTTTTGGTGTTTTGCCCTGCCGCTCATCACGTAATTG 17798 ||| |||||||| || || | | ||| || | | || | ||||| | || | || Sbjct 272 TTGGTCCGGGGTCATCGGTGTGCCTTGAGGGGCTACACCTTCTCGCTCCGCTCGAAGCTG 213 Query 17799 TTTCACCCATCGCGT-CATTGTGGAAAGGCCGACATCCATAGCGCTGGCTGCATCTGCCA 17857 |||||| | || |||||| || || || |||||||| |||||| ||| | Sbjct 212 GCGCACCCA-CTTGTCCATTGTTGATTTACCAACCCCCATAGCGTCGGCTGCTTCTCGAA 154 Query 17858 CGGTGTAATTCTGGTCAACGACCAGTTGAGCGGATTCGCGTTTAAACTCTGCGCTGAA-- 17915 | | | ||| ||||| |||| ||| || | ||| || | || |||| ||| || Sbjct 153 TTGAGCGACCCTGATCAACTACCAATTGGGCTGCTTCAAGTCTGAATTCTGGGCTAAAGG 94 Query 17916 -------ATTTCtttttttCATT-ATGGCACCTGTGTTGTTCT-GAGGTGAGCATATCAC 17966 ||||| | |||||| || ||||||||||||| | ||| ||| |||||||| Sbjct 93 TTGGTCTGGTTCTTCTCTTCATTGAT--CACCTGTGTTGTTGTGGAGATGATCATATCAC 36 Query 17967 CTCTGTTCAGGTGGCCAAATTCAGTAAACCACT 17999 ||| ||||||||||||||||| || ||||| Sbjct 35 CTCCTATCAGGTGGCCAAATTCACTATGCCACT 3 >seq90072 Length=608 Score = 109 bits (120), Expect = 1e-19 Identities = 312/476 (66%), Gaps = 3/476 (1%) Strand=Plus/Plus Query 39377 CTGAAGTGGTCAACAAAAACTGGCCACCGAGTTAGAGTTTTTTCCAGTATCGATTT-TCC 39435 ||| ||||||||| |||||||||||| | |||| || |||| || | ||| ||| Sbjct 124 CTGTAGTGGTCAAGTAAAACTGGCCACAGT-TTAGTAGTTAGTCCAATA-CAATTGCTCC 181 Query 39436 GATTCGTTTGGTGGTAACCCACCATTATATTCGTGCGGTCTTAGTGCGCTGTAATATCCA 39495 | | ||||| ||| |||| ||| | || ||| |||||| ||||||||| ||| Sbjct 182 GCTGTATTTGGACTTAAACCACGATTGTGTTGGTGAGGTCTTGTCTGGCTGTAATAACCA 241 Query 39496 ACGATATAGTCCGTTATTGCGTGAGCTGCATCGCTGAAGCTTACATAGCCCGTCGCCGGC 39555 || | ||| || || | || || || || ||| | || || || ||| Sbjct 242 ACTAGATAATCTGTCACCGCATGCTTCGCTTCAACGAAATTCCGGTAACCAAGTGCTGGC 301 Query 39556 ACCCATTCGTTCTTCAGACTCCTGAAGAAGCGCTCCATTGGGCTGTTATCCCAGCAGTTT 39615 |||||||| | || | ||||||||| || | ||||| || || ||||| || ||| Sbjct 302 ACCCATTCCGTTTTTAAACTCCTGAAAAATCTTTCCATAGGTGCATTGTCCCAACAATTT 361 Query 39616 CCACGCCGACTCATACTCTGCCTGATCCGGTATCTCCACAGTAACTGCCGGAACTGCCTG 39675 || || |||||||| || || || |||| | ||| || |||||| || || | Sbjct 362 CCTCGGCGACTCATGCTTTGTTCAATTTGGTAACGCCATAGCTGCTGCCGAAATTGTCGA 421 Query 39676 CTCGTATAATGACTGCCTTGATCGCTGTGGAACATCACCCCGACGGGCTTACCACGGGTT 39735 || || |||||||||||||| || ||| || | || | || || || | | Sbjct 422 CTGGTGTAATGACTGCCTTGGTCAGAGTGAAAGAGTACGCTTTTCGGTCGGCCGCGCGAT 481 Query 39736 TCCCATGCCATTTCCAGTGCTTTCATGGTAAGCCTGCTGTCCGGCGAGAACGACATGGCC 39795 || | ||||| || || | ||| | | |||| || ||||| |||||||| ||| Sbjct 482 TCATAAGCCATGCTTAGCGCCTGACAGGTTAACGTGCTATCTGGCGATAACGACATCGCC 541 Query 39796 CAGCCCACTGGTTTTCTTGCGAACAGGTCGAGAACAACGGCGAGGTACGCCCAGCG 39851 ||||| | || || | | || | || | ||| || || | || |||||||| Sbjct 542 CAGCCAATCGGCTTGCGGGAAAATAAATCTATAACGACAGCCAAATAGGCCCAGCG 597 Score = 107 bits (118), Expect = 5e-19 Identities = 311/475 (65%), Gaps = 3/475 (1%) Strand=Plus/Plus Query 16753 TGAAGTGGTCAACAAAAACTGGCCACCGAGTTAGAGTTTTTTCCAGTATCGATTT-TCCG 16811 || ||||||||| |||||||||||| | |||| || |||| || | ||| |||| Sbjct 125 TGTAGTGGTCAAGTAAAACTGGCCACAGT-TTAGTAGTTAGTCCAATA-CAATTGCTCCG 182 Query 16812 ATTCGTTTGGTGGTAACCCACCATTATATTCGTGCGGTCTTAGTGCGCTGTAATATCCAA 16871 | ||||| ||| |||| ||| | || ||| |||||| ||||||||| |||| Sbjct 183 CTGTATTTGGACTTAAACCACGATTGTGTTGGTGAGGTCTTGTCTGGCTGTAATAACCAA 242 Query 16872 CGATATAGTCCGTTATTGCGTGAGCTGCATCGCTGAAGCTTACATAGCCCGTCGCCGGCA 16931 | | ||| || || | || || || || ||| | || || || |||| Sbjct 243 CTAGATAATCTGTCACCGCATGCTTCGCTTCAACGAAATTCCGGTAACCAAGTGCTGGCA 302 Query 16932 CCCATTCGTTCTTCAGACTCCTGAAGAAGCGCTCCATTGGGCTGTTATCCCAGCAGTTTC 16991 ||||||| | || | ||||||||| || | ||||| || || ||||| || |||| Sbjct 303 CCCATTCCGTTTTTAAACTCCTGAAAAATCTTTCCATAGGTGCATTGTCCCAACAATTTC 362 Query 16992 CACGCCGACTCATACTCTGCCTGATCCGGTATCTCCACAGTAACTGCCGGAACTGCCTGC 17051 | || |||||||| || || || |||| | ||| || |||||| || || | | Sbjct 363 CTCGGCGACTCATGCTTTGTTCAATTTGGTAACGCCATAGCTGCTGCCGAAATTGTCGAC 422 Query 17052 TCGTATAATGACTGCCTTGATCGCTGTGGAACATCACCCCGACGGGCTTACCACGGGTTT 17111 | || |||||||||||||| || ||| || | || | || || || | || Sbjct 423 TGGTGTAATGACTGCCTTGGTCAGAGTGAAAGAGTACGCTTTTCGGTCGGCCGCGCGATT 482 Query 17112 CCCATGCCATTTCCAGTGCTTTCATGGTAAGCCTGCTGTCCGGCGAGAACGACATGGCCC 17171 | | ||||| || || | ||| | | |||| || ||||| |||||||| |||| Sbjct 483 CATAAGCCATGCTTAGCGCCTGACAGGTTAACGTGCTATCTGGCGATAACGACATCGCCC 542 Query 17172 AGCCCACTGGTTTTCTTGCGAACAGGTCGAGAACAACGGCGAGGTACGCCCAGCG 17226 |||| | || || | | || | || | ||| || || | || |||||||| Sbjct 543 AGCCAATCGGCTTGCGGGAAAATAAATCTATAACGACAGCCAAATAGGCCCAGCG 597 >seq76308 Length=1237 Score = 96.9 bits (106), Expect = 9e-16 Identities = 127/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 39553 GGCACCCATTCGTTCTTCAGACTCCTGAAGAAGCGCTCCATTGGGCTGTTATCCCAGCAG 39612 || |||||||| |||||| ||| | || | |||||||| || ||| ||||| || Sbjct 1074 GGAACCCATTCAGTCTTCAAACTTCGAAACACCCGCTCCATAGGCGAGTTGTCCCAACAA 1015 Query 39613 TTTCCACGCCGACTCATACTCTGCCTGATCCGGTATCTCCACAGTAACTGCCGGAACTGC 39672 || || | |||||||| || ||| || || |||| ||||||| || ||||| | Sbjct 1014 TTCCCTCTGCGACTCATGCTTTGCTCCATGCGATATCGCCACAGTCTTTGACGGAATAAC 955 Query 39673 CTGCTCGTATAATGACTGCCTTGATCGCTGTGGAACATCACCCCGACGGGCTTACC 39728 ||||| | ||| || || || ||||||||||| ||||| || || ||||| ||| Sbjct 954 CTGCTGGCATACTGGCTTCCCTGATCGCTGTGAAACATGACTCCACTGGGCTGACC 899 Score = 96.9 bits (106), Expect = 9e-16 Identities = 127/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 16928 GGCACCCATTCGTTCTTCAGACTCCTGAAGAAGCGCTCCATTGGGCTGTTATCCCAGCAG 16987 || |||||||| |||||| ||| | || | |||||||| || ||| ||||| || Sbjct 1074 GGAACCCATTCAGTCTTCAAACTTCGAAACACCCGCTCCATAGGCGAGTTGTCCCAACAA 1015 Query 16988 TTTCCACGCCGACTCATACTCTGCCTGATCCGGTATCTCCACAGTAACTGCCGGAACTGC 17047 || || | |||||||| || ||| || || |||| ||||||| || ||||| | Sbjct 1014 TTCCCTCTGCGACTCATGCTTTGCTCCATGCGATATCGCCACAGTCTTTGACGGAATAAC 955 Query 17048 CTGCTCGTATAATGACTGCCTTGATCGCTGTGGAACATCACCCCGACGGGCTTACC 17103 ||||| | ||| || || || ||||||||||| ||||| || || ||||| ||| Sbjct 954 CTGCTGGCATACTGGCTTCCCTGATCGCTGTGAAACATGACTCCACTGGGCTGACC 899 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 131988696851200