Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_028773.1 Length=182145 Score E Sequences producing significant alignments: (Bits) Value seq95498 174 2e-38 seq59426 82.4 9e-11 >seq95498 Length=505 Score = 174 bits (192), Expect = 2e-38 Identities = 303/438 (69%), Gaps = 2/438 (0%) Strand=Plus/Plus Query 16896 TGGGTTAAAAACGAACGAACTGGAACACAATGTCTGACACTAATCAACGCCGATTTGGTC 16955 |||||| | || ||||| || || | || ||| | || | || || || ||||| | Sbjct 67 TGGGTTGAGAATGAACGCACAGGTAAACGCTGTTTAACGGTTATTAATGCAGATTTAGAA 126 Query 16956 TATAATGTCGATCAGAACGAAGTTCCTATGGTAACAACTCGCAAAACATTTTATCGCGGC 17015 ||||| || | || || ||| | || ||| |||| || || |||| |||| | Sbjct 127 TATAACGTTGCCCAAAATGAATTCCCGATGATAACGACACGTAAAAGCTTTTTTAAATCT 186 Query 17016 GCTATTGCTGAACTGCTTGGATATCTACGAGGATACGACAATGCTGCCGATTTTCGAGCC 17075 ||||||||||| | | |||||| | || || || || |||||||| |||||||| Sbjct 187 GCTATTGCTGAGTTTTTGGGATATATCCGTGGTTATGATAATGCTGCTGATTTTCGTAAA 246 Query 17076 ATAGGTTGTAACACATGGAATGCTAACGCCAACGAAAACGAAGCTTGGTTGAAGAATCCC 17135 |||| ||| |||||| |||| || || || ||| || | ||| | || ||| | Sbjct 247 TTAGGCACTAAAACATGGGATGCGAATGCTAATTTAAATGATGTATGGCTCAATAATGCT 306 Query 17136 AATCGTAAAGGTGAGGACGATATGGGACGAGTGTATGGCGTTCAGGGTCGTCAGTGGAC- 17194 | |||||||||||||| ||||||||||| || ||||| |||| |||||| ||| | Sbjct 307 TACCGTAAAGGTGAGGATGATATGGGACGGGTTTATGGTATTCAAGGTCGTGCTTGGGCT 366 Query 17195 AAACATGTATGGCGATTCACTTGACCAATTGCGCAAAATATACGATAATCTTCGAAATCG 17254 |||| || |||||| || | |||||||||| |||||| ||||| | | || | Sbjct 367 AAACCTG-ATGGCGGCACAATAGACCAATTGCAGAAAATAGTAGATAACTTGAGTAAAGG 425 Query 17255 AAAAGATGACCGTGGTGAAATTCTGACTTTCTGGAATCCAGGTGAATTCGAATTCGGATG 17314 | ||||| |||| ||||| || | ||| | ||||| || ||||| | | || || Sbjct 426 CATTGATGATCGTGCAGAAATACTAAGTTTTTATAATCCGGGGGAATTTCATATGGGCTG 485 Query 17315 TCTGCGTCCTTGTATGCA 17332 | | | ||||||||||| Sbjct 486 TTTAAGGCCTTGTATGCA 503 >seq59426 Length=9043 Score = 82.4 bits (90), Expect = 9e-11 Identities = 265/402 (66%), Gaps = 11/402 (3%) Strand=Plus/Plus Query 137156 GATTATGTTGTTGTCGGTTCAACGGAACAAGAAATGCTTGATCTCGGTTATGATAAAGTG 137215 |||| || || || || || ||| |||| ||| |||||| |||||||| ||| Sbjct 8043 GATTGGGTGGTGGTTGGCTCCACGCCGCAAGCCATGGTTGATCAAGGTTATGAACCAGTT 8102 Query 137216 GGTTCAGGATTCCCTGTGTTCATTCATCCGAAG-ACTCGCGACGAATACGCACTTGCGAG 137274 ||| || ||||| |||||||| || | || || | || ||||| || | || || Sbjct 8103 GGTAAAGATTTCCCGGTGTTCAT-CAACAAAACCACGGGTGAAGAATATGCTTTGGCTAG 8161 Query 137275 AACTGAGAAGAAAACCGGAAAAGGTTATCTCGGATTCGAAACATATTTCGGA-CCAGAAG 137333 ||| || ||||||| ||||| || | || || || || || || || Sbjct 8162 AACCGAACGCAAAACCGCTAAAGGCTACCAAGGTTTTCAATT-TAACGCGTCGCCTGAGA 8220 Query 137334 TAAGTCTGTCGGAAGATCTTCTTCGTCGTGACTTTACGATGAATGCCATGGCAGAGAA-- 137391 ||| |||| | |||| || ||||| ||| |||| || ||| | |||||||| | Sbjct 8221 TAACTCTGGAGCAAGACCTAGAGCGTCGCGACCTTACCATCAATTCGATGGCAGAAGACC 8280 Query 137392 AGA-TGGTCAGATTTATGATCCACATAACGGTCGTGGTGATATCGCGGACGGTGTTGTTC 137450 ||| |||| | || |||| ||| ||||| ||| | || ||||| ||| | | Sbjct 8281 AGAATGGTGCGCTTATTGATATGCATGGCGGTCAACAAGATTTAGCCGACGGCGTTATAC 8340 Query 137451 GTCACGTTAACGACAAAGCGTTTATCGAAGACCCGGTTCGAATCTTACGAGCGGCACGAT 137510 | || || || || ||| | |||||||| || || ||||||||||| ||||||| Sbjct 8341 GCCATGTATCAGAT---GCTTTTCTAGAAGACCCAGTGCGTATCTTACGAGCCGCACGAT 8397 Query 137511 TTGCAGCGCGTTATGATTTCATCGTTGATCCTGAAACGATTG 137552 |||| || | | || ||| | | | | ||||| || |||| Sbjct 8398 TTGCCGCAAGATTTGGTTTTACCATCGCCCCTGATAC-ATTG 8438 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 581940915001600