Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_028809.1 Length=58637 Score E Sequences producing significant alignments: (Bits) Value seq1104 125 3e-24 >seq1104 Length=359 Score = 125 bits (138), Expect = 3e-24 Identities = 161/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 4861 GCTGAAGTTCGGCGGCCGCGTCTACCGCGAGGTGGACCCCAACGAGCTGTGGGACGCGGT 4920 |||||| ||||||||| ||||||| ||| | || || |||||| || | | Sbjct 17 GCTGAAATTCGGCGGCACCGTCTACAAGACCGTGCGCGCCCGGGATCTGTGGAACCGGAT 76 Query 4921 CATGCGCTCCACCTGGGACTGGGCCGAGCCGGGCGTCCTGTTCATCGACCGCATCAACGA 4980 ||||| | |||| | || ||||| || ||||| | || || ||||||||||| | Sbjct 77 CATGCAGGCAACCTTTGCCTATGCCGAACCCGGCGTAATTTTTATTGACCGCATCAATGC 136 Query 4981 GATGAACAACCTCCACTACTGCGAGACCATCGCGGCGACCAACCCGTGCGGCGAGCAGCC 5040 | |||||||| |||||||| ||||| || ||||| |||||||| || ||||| Sbjct 137 GCGCAACAACCTGTCTTACTGCGAAACCATTCACGCCACCAATCCGTGCGGTGAACAGCC 196 Query 5041 GCTGCCACCGTTCGGCGCCTGCCTGCTCGGCTCCTTCAACCT 5082 |||||| || | ||| |||||||||||||| ||| |||| || Sbjct 197 GCTGCCGCCCTACGGTGCCTGCCTGCTCGGTTCCATCAATCT 238 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 187273744474176