Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_028827.1 Length=50165 Score E Sequences producing significant alignments: (Bits) Value seq105687 120 1e-22 >seq105687 Length=390 Score = 120 bits (132), Expect = 1e-22 Identities = 251/371 (68%), Gaps = 10/371 (3%) Strand=Plus/Minus Query 40009 CTTGGTCAGCTTCTCGCCGACCTGGAAGGGCTTGTCCAGCACGCGGGCCGCGTCCTTCAT 40068 ||||| || || ||| | | | | ||| |||| || |||| |||||| |||| || Sbjct 373 CTTGGAGAGTTTGTCGGCAAGCCCGTAGGACTTGCCCTGCACCCGGGCCACGTCGCGCAC 314 Query 40069 ---CGCGTTGCGCGCCTTGATCCGGCCGAAGGTCCCGATCTGTGCGACCTTGTCGGCCCC 40125 ||| ||| |||| ||| ||||||||| ||||| | ||| ||| ||| Sbjct 313 TACCGCCTTGGCCGCC---ATCGTGCCGAAGGTAATAATCTGCGACACCGCCTCGCGCCC 257 Query 40126 GTACTTCTCGGTGACGTACCGGATGACCTCGCCGCGACG--CCGGTCATCGAAGTCGATG 40183 ||| | || | ||||||| ||| || | |||| || || ||| || | | Sbjct 256 GTAGGTGTCCGCGACGTACTCGATCACGAGGTCGCGCTTTTCCATGCA--GAAATCCACG 199 Query 40184 TCAACGTCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGC 40243 || | || ||||||||||| || ||||||||||| || |||||||| | | ||| Sbjct 198 TCGAAATCCGGCATGGACACCCGTTCGGGGTTCAGAAAGCGCTCGAACAGCAAGTCGTAT 139 Query 40244 TCCAGTGGATCGAGGTCGGTGATCCCGAGGCAGTAGGCGACCAGCGAACCGGCTGCCGAG 40303 ||||| |||||||| ||||| ||| | || |||| || ||||| || ||||| | ||| Sbjct 138 TCCAGCGGATCGAGATCGGTAATCTCCAGCGAGTACGCCACCAGTGAGCCGGCACCGGAG 79 Query 40304 CCTCGCCCAGGACCGACCCACACGCCGTTCTCCTTGGCCCAGCCGATGAAGTCGGCGACG 40363 || ||||| || || ||| | |||| || ||||||| ||||||||| || Sbjct 78 CCACGCCCCGGGCCCACCGGGATATCGTTGCGTTTAGCCCAGCGGATGAAGTCCATCACA 19 Query 40364 ACCAGGAAGTA 40374 | ||| ||||| Sbjct 18 ATCAGAAAGTA 8 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160198484432448