Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_028834.1 Length=48216 Score E Sequences producing significant alignments: (Bits) Value seq60251 96.9 1e-15 seq65074 91.5 5e-14 >seq60251 Length=5058 Score = 96.9 bits (106), Expect = 1e-15 Identities = 68/78 (87%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 36269 TGGTCGGAGTACTAGGATTCGAACCTAGGACCCTCTGCTCCCAAAGCAGATGCGCTGCCA 36328 ||||||| || ||||||||||||||| |||||||| ||||||| |||||||||| ||| Sbjct 2391 TGGTCGGGGTGATAGGATTCGAACCTACGACCCTCTAGTCCCAAACCAGATGCGCTACCA 2450 Query 36329 GACTGCGCTACACTCCGA 36346 | ||||||||||| |||| Sbjct 2451 GGCTGCGCTACACCCCGA 2468 >seq65074 Length=2491 Score = 91.5 bits (100), Expect = 5e-14 Identities = 67/78 (86%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 36269 TGGTCGGAGTACTAGGATTCGAACCTAGGACCCTCTGCTCCCAAAGCAGATGCGCTGCCA 36328 ||||||||| ||||||||||||| ||||||||| ||||||| |||||||||| ||| Sbjct 25 TGGTCGGAGCGGCAGGATTCGAACCTGCGACCCTCTGGTCCCAAACCAGATGCGCTACCA 84 Query 36329 GACTGCGCTACACTCCGA 36346 | ||||||||| |||||| Sbjct 85 GGCTGCGCTACGCTCCGA 102 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 153969768447872