Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_028890.1 Length=162486 Score E Sequences producing significant alignments: (Bits) Value seq24484 89.7 5e-13 seq97209 84.2 2e-11 >seq24484 Length=264 Score = 89.7 bits (98), Expect = 5e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 27090 CTTAGCTCAGTTGGTAGAGCGATTGACTTGTAATCAATAGGTCGTGGGTTCGAATCCTAC 27149 |||||||||||||||||||| | ||||||||||||| ||||||| |||||| ||| | Sbjct 119 CTTAGCTCAGTTGGTAGAGCAACTGACTTGTAATCAGTAGGTCGCCAGTTCGACTCCGGC 178 Query 27150 AGTCGGCACCAT 27161 |||||||||||| Sbjct 179 AGTCGGCACCAT 190 >seq97209 Length=479 Score = 84.2 bits (92), Expect = 2e-11 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 27090 CTTAGCTCAGTTGGTAGAGCGATTGACTTGTAATCAATAGGTCGTGGGTTCGAATCCTAC 27149 |||||||||||||||||||| ||| ||||||||| ||||| ||||||||||||| | Sbjct 272 CTTAGCTCAGTTGGTAGAGCACCTGATTTGTAATCAGGGGGTCGCGGGTTCGAATCCTGC 331 Query 27150 AGTCGGCACCA 27160 || |||||||| Sbjct 332 AGCCGGCACCA 342 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 519117947768320