Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_028898.1 Length=35764 Score E Sequences producing significant alignments: (Bits) Value seq100435 113 1e-20 seq83109 80.6 6e-11 >seq100435 Length=440 Score = 113 bits (124), Expect = 1e-20 Identities = 244/357 (68%), Gaps = 10/357 (3%) Strand=Plus/Minus Query 24448 TGTCAGATTA-ATTTGAGCT-TAAATTCTTTTCCACCCAAATCCGTTTTCCATCAAGTAA 24505 |||||||| | ||||| || | |||| | ||| ||| || |||| || |||| | Sbjct 434 TGTCAGATCAGATTTGGTCTATGAATT--TCTCCTTCCAGATTTGTTTGCCTTCAATCAT 377 Query 24506 GGTTGCCATCGGTGTTCTGCCACAGCACATTTTTCCTTGATGTGTTCGATG-GTGATTAT 24564 ||| | | || ||||| || || ||||||||||| ||||| || || | ||| || | Sbjct 376 GGTCTCGAAGGGCGTTCTTCCGCAACACATTTTTCCCTGATGGGTGCGCTCAGTG-TTGT 318 Query 24565 AATACATTAACCACTCATCTAAATCCGCTTGTAATG--TCGTTAAATCCGTATAAATTTT 24622 | | | | ||| ||||| | ||| || || | | ||| || |||| | || Sbjct 317 AGTGGTTGAGCCATTCATCAAGATCAGCCTGCAGTTGCTCGACGGATTCGTACAGGTT-- 260 Query 24623 CTTCCTAAATGCCACTTGGTAAAATTCTTGTAAGATTGTTTTATGGAACCGTTCGCAGAT 24682 ||| | || | | |||||||| || || || || || || |||||||| ||||| || Sbjct 259 CTTGCGGAACGTGATCTGGTAAAACTCCTGCAAAATGGTCTTGTGGAACCGCTCGCAAAT 200 Query 24683 GCCGTTAGTCTGCGGATGTTTTACCTTGGTTTTACTGTGTTCAATATCATTTATTGCTAA 24742 ||||||||| || || ||| ||||||||||| |||| |||||||| || || || | Sbjct 199 GCCGTTAGTTTGAGGCGATTTGACCTTGGTTTTGGTGTGGTCAATATCGTTGATGGCAAG 140 Query 24743 ATAAAGCTCATAATCGTGATTTTCTACCTTGCCACAATATTCACTTCCTCGGTCAGT 24799 | || | || ||||| || || | || |||||||| |||| || ||||| Sbjct 139 GAAGAGTTGGTAGTCGTGCTTGTCGGGCCGACCGCAATATTCGGTTCCCCGATCAGT 83 >seq83109 Length=851 Score = 80.6 bits (88), Expect = 6e-11 Identities = 150/219 (68%), Gaps = 6/219 (3%) Strand=Plus/Plus Query 30924 TTACCTTGACTGCTCCGTCTAAGTATCACGCAATGCTTTCAAGAACCAGTAGCGTGAACC 30983 |||| || || ||||| ||| |||||||| | |||||| | ||| || | Sbjct 313 TTACTTTAACCGCTCCTAGTAAATATCACGC---GGTTTCAAA---CGGTAAATCAAATC 366 Query 30984 CGAAATGGAATGGAGCAAGCCCTGCGGAAACACAGGTTTACCTTGTGAATACTTGGGCGA 31043 | || |||||||| | ||| ||||| || | ||| | |||| ||| ||||||| Sbjct 367 CAAAGTGGAATGGCTGCACACCTAAAGAAACTCAAGCTTATTTAGTGAGTACATGGGCGA 426 Query 31044 AAATCCGTGCCAAACTCAACCGTGAGGGCGTAATGGCTTACGGTTTTCGAGTGGCTGAAC 31103 |||| || || || | || ||| | ||| | | ||| ||| |||| || |||||| Sbjct 427 AAATTCGCGCTGAATTAAAGCGTAAAGGCATTACTTATTATGGTGTTCGGGTAACTGAAC 486 Query 31104 CTCACGCTGACGCTACCCCACACTGGCATTTAATTCTAT 31142 ||||| ||| || |||||||| ||||| ||| || ||| Sbjct 487 CTCACCATGATGCAACCCCACATTGGCACTTACTTTTAT 525 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 114175016554624