Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_028906.1 Length=75933 Score E Sequences producing significant alignments: (Bits) Value seq83019 170 9e-38 >seq83019 Length=855 Score = 170 bits (188), Expect = 9e-38 Identities = 360/531 (68%), Gaps = 17/531 (3%) Strand=Plus/Minus Query 66701 CAGCCCGATACCGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGAG 66760 ||||| |||||||| ||||||| || ||||| | || || || || |||| | Sbjct 800 CAGCCGGATACCGGTGAGCAGGGTCTCGAGATTGCCGATACGCTGGTGCGCTCCGGCGCG 741 Query 66761 CTGTCCATCGTCGTCGTTGACTCCGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGGC 66820 | | | ||| ||||||||||||| ||| || |||||| |||||||| |||||| Sbjct 740 GTTGAGGTTCTGGTCATTGACTCCGTGGCTGCCTTGACGCCGCGTGCCGAGCTTGAAGGC 681 Query 66821 GACATCGGGGA--CAGTCACGTCGGCCTGCACGCGCGCCTCATGTCACAGGCCATGCGCA 66878 ||||| ||||| || | || |||||||| || ||||| ||| ||||| |||||| Sbjct 680 GACATGGGGGATTCACTGCCG--GGCCTGCAGGCTCGCCTGATGAGCCAGGCGCTGCGCA 623 Query 66879 AGCTCACTGGCACCATCTCCAGCACCAA---CACGCTGACGCTCTGGGTCAACCAGTTGC 66935 |||| || || | || |||| ||| | || | ||| ||| |||||||| | | Sbjct 622 AGCTTACCGGTTCGATTTCCAAGACCCATTGCATGGTGA---TCTTCATCAACCAGATCC 566 Query 66936 GCGAGAAGATCGGCAACGTGGGCTACGGCCCGAATGAGACCACCACGGGCGGAAAGGCTT 66995 || |||||||||| | || | |||| ||| || || |||||||| || || Sbjct 565 GCATGAAGATCGGCGTCATG---TTCGGCAACCCTGAAACAACAACGGGCGGCAATGCGC 509 Query 66996 TGAGGTTCTACGCCTCAGTCCGTATGGATGTCCGTCGCATCGCCACCGAGAAGGAAGGCG 67055 ||| ||||| | || || ||| | || | || ||||||| | | ||||| | | Sbjct 508 TGAAATTCTATTCGTCGGTGCGTCTCGACATTCGCCGCATCGGCGCGATCAAGGATCGTG 449 Query 67056 ATGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCGCCGC 67115 | || | || || |||| ||||| || ||||| || ||||||||| | || ||||| Sbjct 448 ACGAAGTGGTGGGTAACCAGACCCGCGTAAAGGTGGTGAAGAACAAGGTTGCACCGCCAT 389 Query 67116 ACCGCAATGCCGAGTTCTCCGTCGTGTACGGGGAGGGCATCTCGCGTGAGGTCGAACTCC 67175 |||| | | |||||| || |||| || ||||| || || | | || | | Sbjct 388 TCCGCCAGGTTGAGTTCGATATCATGTATGGTGAGGGTATTTCCAAGGTTGGAGAGTTGC 329 Query 67176 TCGACCTGGCCGTGTCGCAG--GGCCTGGTGAAGAAGTCGGGCGCCTGGTT 67224 ||||||| | ||||| | | ||| | || | ||||||||| ||||||| Sbjct 328 TCGACCTTG--GTGTCACCGGTGGCATTGTTGAAAAGTCGGGCTCCTGGTT 280 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 242537724706368