Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_028931.1 Length=55108 Score E Sequences producing significant alignments: (Bits) Value seq1104 87.8 6e-13 >seq1104 Length=359 Score = 87.8 bits (96), Expect = 6e-13 Identities = 129/180 (72%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 4339 GAGCTGTGGGACGCTGTCATGCGCTCCACCTGGGACTGGGCCGAGCCGGGCGTCCTGTTC 4398 || |||||| || |||||| | |||| | || ||||| || ||||| | || Sbjct 60 GATCTGTGGAACCGGATCATGCAGGCAACCTTTGCCTATGCCGAACCCGGCGTAATTTTT 119 Query 4399 ATCGACACCATCAACCGCATG-AACAATCTCTGGTACTGCGAGGAGATTGCGGCCACCAA 4457 || ||| |||||| || | ||||| || | |||||||| ||| |||||||| Sbjct 120 ATTGACCGCATCAAT-GCGCGCAACAACCTGTCTTACTGCGAAACCATTCACGCCACCAA 178 Query 4458 CCCGTGCGGCGAGCAGCCGCTGCCTCCGTTCGGCGCCTGCCTGCTTGGCTCCTTCAACCT 4517 |||||||| || ||||||||||| || | ||| ||||||||||| || ||| |||| || Sbjct 179 TCCGTGCGGTGAACAGCCGCTGCCGCCCTACGGTGCCTGCCTGCTCGGTTCCATCAATCT 238 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 175995581975680