Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_028976.1 Length=50113 Score E Sequences producing significant alignments: (Bits) Value seq105687 91.5 5e-14 >seq105687 Length=390 Score = 91.5 bits (100), Expect = 5e-14 Identities = 220/331 (66%), Gaps = 18/331 (5%) Strand=Plus/Minus Query 39375 AGGGCTTGTCCAGCACGCGGGCCGCGTCCTTCAT---CGCGTTGCGGGCCTTGATCCTGC 39431 ||| |||| || |||| |||||| |||| || ||| ||| ||| ||| ||| Sbjct 347 AGGACTTGCCCTGCACCCGGGCCACGTCGCGCACTACCGCCTTGGCCGCC---ATCGTGC 291 Query 39432 CGTACGTCGCGATCTGTGCGACCTTGTCGCTGCCGTACTTCTCGGTGACGTACCGGATCA 39491 || | || ||||| | ||| |||| ||||| | || | ||||||| ||||| Sbjct 290 CGAAGGTAATAATCTGCGACACCGCCTCGCGCCCGTAGGTGTCCGCGACGTACTCGATCA 231 Query 39492 CGTCGCCACGGCGACGGTCATCGAAGTCGATGTCCACGTCG------GGCATGGAGACGC 39545 || | | || || | || | | || ||||||||| |||||||| || | Sbjct 230 CG-----AGGTCG-CGCTTTTCCATGCAGAAATCCACGTCGAAATCCGGCATGGACACCC 177 Query 39546 GCTCAGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGAGGGATGGGGTCCAGGTCGGTGA 39605 | || |||||||| || |||||||| | | ||| | || || || ||||| | Sbjct 176 GTTCGGGGTTCAGAAAGCGCTCGAACAGCAAGTCGTATTCCAGCGGATCGAGATCGGTAA 117 Query 39606 TCCCGAGGGCGTACGCGGCCAGCGAGCCAGCCGCAGAGCCACGCCCAGGGCCGACCCACA 39665 || | || | |||||| |||| ||||| || | ||||||||||| ||||| ||| | Sbjct 116 TCTCCAGCGAGTACGCCACCAGTGAGCCGGCACCGGAGCCACGCCCCGGGCCCACCGGGA 57 Query 39666 CACCGTTCTCCTTCGCCCAGCCGATGAAGTC 39696 | |||| || ||||||| ||||||||| Sbjct 56 TATCGTTGCGTTTAGCCCAGCGGATGAAGTC 26 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160032300116800