Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_028980.1 Length=62181 Score E Sequences producing significant alignments: (Bits) Value seq1104 109 2e-19 >seq1104 Length=359 Score = 109 bits (120), Expect = 2e-19 Identities = 140/189 (74%), Gaps = 3/189 (2%) Strand=Plus/Plus Query 33072 CGCCCGGGCGCTGTGGGACGCGATCATGCGCGGGACCTGGGACTGGGCGGAGCCTGGGGT 33131 |||||||| |||||| || |||||||| | |||| | || || || || || || Sbjct 53 CGCCCGGGATCTGTGGAACCGGATCATGCAGGCAACCTTTGCCTATGCCGAACCCGGCGT 112 Query 33132 GCTGTTCATCGACGCGATCAACCGCATG-AACAACCTCTGGTACTGCGAGACCATCGCCG 33190 | || || ||| ||||| || | |||||||| | |||||||| ||||| || Sbjct 113 AATTTTTATTGACCGCATCAAT-GCGCGCAACAACCTGTCTTACTGCGAAACCATTCACG 171 Query 33191 CCACCAACCCCTGCGGTGAGCAACCGCTCCCGCCCTACGGTGCCTGCTTGTTGGGCTCCT 33250 ||||||| || |||||||| || ||||| |||||||||||||||||| || | || ||| Sbjct 172 CCACCAATCCGTGCGGTGAACAGCCGCTGCCGCCCTACGGTGCCTGCCTGCTCGGTTCCA 231 Query 33251 TCAA-CTTG 33258 |||| |||| Sbjct 232 TCAATCTTG 240 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 198599844756032