Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_028999.1 Length=309208 Score E Sequences producing significant alignments: (Bits) Value seq40947 93.3 8e-14 seq59211 87.8 4e-12 seq24484 86.0 1e-11 seq60648 84.2 4e-11 >seq40947 Length=228 Score = 93.3 bits (102), Expect = 8e-14 Identities = 59/63 (94%), Gaps = 1/63 (2%) Strand=Plus/Minus Query 294875 GGATTCGAACCCGTCGACCTACTGATTACAAGTCAGTTGCTCTACCAGCTGAGCTATAAC 294934 ||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| | Sbjct 223 GGATTCGAACCCGG-GACCTACTGATTACAAATCAGTTGCTCTACCAGCTGAGCTATACC 165 Query 294935 GGC 294937 ||| Sbjct 164 GGC 162 >seq59211 Length=14513 Score = 87.8 bits (96), Expect = 4e-12 Identities = 68/80 (85%), Gaps = 1/80 (1%) Strand=Plus/Minus Query 294860 ATGGTGCCGTCAGAGGGATTCGAACCCGTCGACCTACTGATTACAAGTCAGTTGCTCTAC 294919 |||||||| || | ||| ||||||| | |||||||||||||||| ||||||||||||| Sbjct 10942 ATGGTGCCCCCACACGGACTCGAACC-GCGGACCTACTGATTACAAATCAGTTGCTCTAC 10884 Query 294920 CAGCTGAGCTATAACGGCAA 294939 || |||||||||| ||||| Sbjct 10883 CAACTGAGCTATAGGGGCAA 10864 >seq24484 Length=264 Score = 86.0 bits (94), Expect = 1e-11 Identities = 69/82 (84%), Gaps = 1/82 (1%) Strand=Plus/Minus Query 294860 ATGGTGCCGTCAGAGGGATTCGAACCCGTCGACCTACTGATTACAAGTCAGTTGCTCTAC 294919 ||||||||| | | ||| |||||| | ||||||||||||||||||||||||||||||| Sbjct 190 ATGGTGCCGACTGCCGGAGTCGAACTGG-CGACCTACTGATTACAAGTCAGTTGCTCTAC 132 Query 294920 CAGCTGAGCTATAACGGCAATA 294941 || |||||||| ||||| || Sbjct 131 CAACTGAGCTAAGTCGGCACTA 110 >seq60648 Length=4437 Score = 84.2 bits (92), Expect = 4e-11 Identities = 54/58 (93%), Gaps = 1/58 (2%) Strand=Plus/Plus Query 294873 AGGGATTCGAACCCGTCGACCTACTGATTACAAGTCAGTTGCTCTACCAGCTGAGCTA 294930 |||||||||||||| | ||||||||||||| |||||||||||||||||| |||||||| Sbjct 4268 AGGGATTCGAACCC-TGGACCTACTGATTAAAAGTCAGTTGCTCTACCAACTGAGCTA 4324 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 987950805948256