Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_029042.1 Length=156833 Score E Sequences producing significant alignments: (Bits) Value seq9867 91.5 1e-13 seq59553 89.7 5e-13 >seq9867 Length=315 Score = 91.5 bits (100), Expect = 1e-13 Identities = 58/62 (94%), Gaps = 1/62 (2%) Strand=Plus/Plus Query 19457 GGACTTGAACCAGCGACCAATCGATTATGAGTCGACTGCTCTAACCA-CTGAGCTACGGG 19515 ||||||||||| |||||||||||||||||||||||||||||||||| |||||||| ||| Sbjct 121 GGACTTGAACCTTCGACCAATCGATTATGAGTCGACTGCTCTAACCAGCTGAGCTATGGG 180 Query 19516 CC 19517 || Sbjct 181 CC 182 >seq59553 Length=7800 Score = 89.7 bits (98), Expect = 5e-13 Identities = 66/76 (87%), Gaps = 1/76 (1%) Strand=Plus/Plus Query 19443 TGGTGACCCTGGCTGGACTTGAACCAGCGACCAATCGATTATGAGTCGACTGCTCTAACC 19502 ||||| || | ||||||| ||||||| ||||||| ||||||||||| |||||||||||| Sbjct 3029 TGGTGGGCCCGCCTGGACTCGAACCAGGGACCAATGGATTATGAGTCCACTGCTCTAACC 3088 Query 19503 -ACTGAGCTACGGGCC 19517 |||||||||| |||| Sbjct 3089 AACTGAGCTACAGGCC 3104 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 501053029218560