Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_029079.1 Length=75339 Score E Sequences producing significant alignments: (Bits) Value seq83019 165 4e-36 >seq83019 Length=855 Score = 165 bits (182), Expect = 4e-36 Identities = 318/462 (69%), Gaps = 23/462 (5%) Strand=Plus/Minus Query 66396 GTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGGCGACATCGGGGAC 66455 ||| ||||||| ||||| ||| || |||||| |||||||| ||||||||||| ||||| Sbjct 728 GTCATTGACTCCGTGGCTGCCTTGACGCCGCGTGCCGAGCTTGAAGGCGACATGGGGGAT 669 Query 66456 AGTCACGTC--GGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGCAAGCTCACCGGCA 66513 |||| | |||||||| || ||||| ||| ||||| |||||||||| ||||| Sbjct 668 --TCACTGCCGGGCCTGCAGGCTCGCCTGATGAGCCAGGCGCTGCGCAAGCTTACCGGTT 611 Query 66514 CCATCTCCAGCACCAA---CACGCTGACGCTCTGGGTCAACCAGTTGCGCGAGAAGATCG 66570 | || |||| ||| | || | ||| ||| |||||||| | ||| |||||||| Sbjct 610 CGATTTCCAAGACCCATTGCATGGTGA---TCTTCATCAACCAGATCCGCATGAAGATCG 554 Query 66571 GCAACGTGGGCTACGGCCCGAAC---GAGACCACCACGGGCGGCAAGGCTTTGAGGTTCT 66627 || | || | |||| ||| || || || ||||||||||| || ||| |||| Sbjct 553 GCGTCATG---TTCGGC---AACCCTGAAACAACAACGGGCGGCAATGCGCTGAAATTCT 500 Query 66628 ACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAAGGCGATGAGGCTG 66687 | | || || || | || | || ||||||| | | ||||| | || || | | Sbjct 499 ATTCGTCGGTGCGTCTCGACATTCGCCGCATCGGCGCGATCAAGGATCGTGACGAAGTGG 440 Query 66688 TCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCGCCGCACCGCAATG 66747 | || |||| ||||| || ||||| || ||||||||| | || ||||| |||| | | Sbjct 439 TGGGTAACCAGACCCGCGTAAAGGTGGTGAAGAACAAGGTTGCACCGCCATTCCGCCAGG 380 Query 66748 CCGAGTTCTCCGTCGTGTACGGGGAGGGCATCTCGCGTGAGGTCGAACTCCTCGACCTGG 66807 |||||| || |||| || ||||| || || | | || | |||||||| | Sbjct 379 TTGAGTTCGATATCATGTATGGTGAGGGTATTTCCAAGGTTGGAGAGTTGCTCGACCTTG 320 Query 66808 CCGTGTCGCAG--GGCCTGGTGAAGAAGTCGGGCGCCTGGTT 66847 ||||| | | ||| | || | ||||||||| ||||||| Sbjct 319 --GTGTCACCGGTGGCATTGTTGAAAAGTCGGGCTCCTGGTT 280 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 240639453321600