Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_029119.1 Length=127726 Score E Sequences producing significant alignments: (Bits) Value seq77519 107 2e-18 seq60379 95.1 1e-14 seq98856 89.7 4e-13 >seq77519 Length=1156 Score = 107 bits (118), Expect = 2e-18 Identities = 196/285 (69%), Gaps = 14/285 (5%) Strand=Plus/Minus Query 126090 TAAATATGTGCATCTCCAAATGTATGAATGAATTCACCCACCTCAAGTCCACATTCTTTT 126149 || ||||| |||| |||||||| |||| ||||| || | ||| || | || ||| Sbjct 966 TATATATGCACATCACCAAATGTGTGAACAAATTCGCCTAGCTCGAGCTCGCAAACTTGC 907 Query 126150 GCAACAAG-ATGTGTCAGTAAAGCATAACTTGCAATATTGAAAGGAACACCTAAAAATAT 126208 || || | ||| |||| | ||| ||||| ||||| || || || || || || |||| Sbjct 906 GCCACCATCATG-GTCAACAGAGCGTAACTAGCAATGTTAAACGGTACGCCCAAGAATAA 848 Query 126209 ATCAGCACTTCTTTGATATAATTGACAATTTAATTTACCCTCTTG---TACGTAAAATTG 126265 ||||||||||| |||||| || || ||| | | ||| || || || |||||||| Sbjct 847 ATCAGCACTTCGTTGATACAACTGGCAACTCAGTTTTTTATCGTGCGACACATAAAATTG 788 Query 126266 AAACATTGTGTGGCAAGGTGGTAA---------TGCCATTGAATCGATTTCAGTAGGATT 126316 || | || ||||| || ||||| |||||| || || || ||| || Sbjct 787 GAATAAGGTATGGCACGGCGGTAAACCGGCTTTGGCCATTTCTTCTATCTCGCCAGGGTT 728 Query 126317 CCATGCTGAAACAATGTGACGTCGAGAGTTTGGATTGGTTTTAAT 126361 |||||| || || || |||| | |||| | || ||||||||||| Sbjct 727 CCATGCCGATACGATTAGACGCCTAGAGCTAGGGTTGGTTTTAAT 683 >seq60379 Length=4852 Score = 95.1 bits (104), Expect = 1e-14 Identities = 190/282 (67%), Gaps = 0/282 (0%) Strand=Plus/Plus Query 126080 ATGATTGGAATAAATATGTGCATCTCCAAATGTATGAATGAATTCACCCACCTCAAGTCC 126139 ||| || ||||| | ||| ||||| |||| |||||| | ||| |||||||||||||| | Sbjct 1427 ATGGTTCGAATACAAATGCGCATCCCCAAGTGTATGCACGAAATCACCCACCTCAAGGTC 1486 Query 126140 ACATTCTTTTGCAACAAGATGTGTCAGTAAAGCATAACTTGCAATATTGAAAGGAACACC 126199 ||| | | ||||| | || || || | ||||| || |||||||| || ||||| Sbjct 1487 ACACACCTGTGCAATCATGTGCGTAAGAAGCGCATAGGACGCGATATTGAATGGCACACC 1546 Query 126200 TAAAAATATATCAGCACTTCTTTGATATAATTGACAATTTAATTTACCCTCTTGTACGTA 126259 |||||| ||||| || | ||||| | || || | || || || || || Sbjct 1547 TAAAAAGATATCCGCCGAACGCTGATAGAGCTGGCATGAAAGCTTGCCGTCCGCGACATA 1606 Query 126260 AAATTGAAACATTGTGTGGCAAGGTGGTAATGCCATTGAATCGATTTCAGTAGGATTCCA 126319 ||| ||||||| || || || || || ||||| || | || ||| ||||| Sbjct 1607 AAACTGAAACAGACAATGACATGGCGGCAAAGCCATCTCGTCTACCAGAGCAGGGTTCCA 1666 Query 126320 TGCTGAAACAATGTGACGTCGAGAGTTTGGATTGGTTTTAAT 126361 || |||||||| || || || || |||||| | || || Sbjct 1667 AGCACTCACAATGTGGCGGCGCGAATTCGGATTGTTCTTGAT 1708 >seq98856 Length=458 Score = 89.7 bits (98), Expect = 4e-13 Identities = 202/299 (68%), Gaps = 15/299 (5%) Strand=Plus/Minus Query 126075 TCCATATGATTGGAATAAATATGTGCATCTCCAAATGTATGAATGAATTCACCCACCTCA 126134 ||||||||||| ||||| | ||| ||||| ||||| ||||| | || || || || Sbjct 375 TCCATATGATTAGAATAGAGATGAGCATCGCCAAAAGTATGCACAAAATCCCCAGGCTGT 316 Query 126135 AGTCCACATTCTTTTGCAACAAGATGTGTCAGTAAAGCATAACTTGCAATATTGAAAGGA 126194 | ||| | ||| || | | | || || | || ||| |||||| || || || Sbjct 315 AATCCCGCTACTTGAGCGATCATCAGCGTTAGCAGTGCGTAAGATGCAATGTTAAATGGC 256 Query 126195 ACACCTAAAAATATATCAGCACTTCTTTGATATAATTGACAATTTAATTTACCCTCTT-- 126252 |||||||| |||| ||| ||||||||||| || | || || ||| || | ||| Sbjct 255 ACACCTAATAATACATCCGCACTTCTTTGGTACAGCTGGCACGATAA---ACGCCCTTCC 199 Query 126253 GT-ACGTAAAATTGAAACATTGTGTGGCAAGGTGGTAAT---GCCATTG-AATC-----G 126302 || ||||| || ||||||| || |||||||| || ||| | | ||| ||| Sbjct 198 GTAACGTAGAACTGAAACAGCGTATGGCAAGGAGGCAATCCAGACTTTGCCATCACCGGA 139 Query 126303 ATTTCAGTAGGATTCCATGCTGAAACAATGTGACGTCGAGAGTTTGGATTGGTTTTAAT 126361 || || |||||||||| || || || || || || || | || ||||||||||| Sbjct 138 ATATCTTTAGGATTCCAGGCCGAGACTATTAAGCGCCGTGAATCCGGGTTGGTTTTAAT 80 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408054845634464