Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq98856 89.7 5e-13 >seq98856 Length=458 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 34586 CCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGCTGTCCTGCCAGCTC 34645 || || ||||| || || | || |||||||| || | ||| | || |||||||| Sbjct 164 CCTCCTTGCCATACGCTGTTTCAGTTCTACGTTACGGAAGGGCGTTTATCGTGCCAGCTG 223 Query 34646 TATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAGTTACGCTCTG 34705 || ||| || | || | ||||| ||||| || |||||||| |||||| ||| Sbjct 224 TACCAAAGAAGTGCGGATGTATTATTAGGTGTGCCATTTAACATTGCATCTTACGCACTG 283 Query 34706 CTCACGTACATGATCGCTCATGTCGTGGGGTTGGTTCCTGGGGAGCTGGTGCATACGTTG 34765 || ||| ||||||||||| || | ||| || |||||||| | |||||||| || Sbjct 284 CTAACGCTGATGATCGCTCAAGTAGCGGGATTACAGCCTGGGGATTTTGTGCATACTTTT 343 Query 34766 GGGGATGCGCATATCTA 34782 || ||||| ||| |||| Sbjct 344 GGCGATGCTCATCTCTA 360 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 6563 TAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCAACCCCACGACATGA 6622 |||| ||| ||||| || || |||||||| | |||||||| || ||| | || ||| Sbjct 360 TAGAGATGAGCATCGCCAAAAGTATGCACAAAATCCCCAGGCTGTAATCCCGCTACTTGA 301 Query 6623 GCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCCATG 6682 |||||||| ||| ||||| |||||| |||||||| || ||||| ||||| | Sbjct 300 GCGATCATCAGCGTTAGCAGTGCGTAAGATGCAATGTTAAATGGCACACCTAATAATACA 241 Query 6683 TCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGGCAG 6742 || | || ||| || |||||||| || | ||| | || |||||||| || | Sbjct 240 TCCGCACTTCTTTGGTACAGCTGGCACGATAAACGCCCTTCCGTAACGTAGAACTGAAAC 181 Query 6743 AGGGTGTGGCACGGGGG 6759 || || ||||| || || Sbjct 180 AGCGTATGGCAAGGAGG 164 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447650790781440