Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq70280 118 9e-22 seq34388 84.2 2e-11 >seq70280 Length=1721 Score = 118 bits (130), Expect = 9e-22 Identities = 351/532 (66%), Gaps = 11/532 (2%) Strand=Plus/Plus Query 118353 ATGTTTGTAGTTTTCCAAAATAAAATCTTCAAACTTAAAGTCTTCTATATTTTTGATATC 118412 ||||||||| | | |||| | ||||||||||| ||||| ||||| |||| ||| || || Sbjct 109 ATGTTTGTATTCTACCAATTTGAAATCTTCAAATTTAAAATCTTCAATATCTTTTATTTC 168 Query 118413 CTTGTTTATGGATAGT-GTGGGAAACGGGAGAGGCTCCCTTGTGAGTTGGAGTTTCAGTG 118471 ||| || | || | |||||||| || || | ||| | | || ||| |||| Sbjct 169 CTTTGAAATCGTTAATTGTGGGAAA-GGATTTGGATACCTCTTTAACTGTCTTTTAAGTG 227 Query 118472 GCTCAATGTGATTCATATAGACATGAGCATCCCCAATTGTATGTATGAATTCACCAGGTG 118531 ||| | ||||| | || |||||||| || || | || || ||||||||||| | Sbjct 228 GCTTCACATGATTTTTGTATACATGAGCGTCTCCTAAAGTGTGAATGAATTCACCTCTTT 287 Query 118532 TAAGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAG 118591 ||| ||| | |||||||||||| | || | | ||| || || |||| ||| || | Sbjct 288 CAAGGCCTCAAATCTGAGCAATCATGCAGGTGAGTAGACTATAACTAGCTATATTGAATG 347 Query 118592 GAACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTT- 118650 | || || ||||| || || || || |||| || || || | || ||| Sbjct 348 GTACTCCTAGACCAATATCACAACTCCTTTGATACATCTGACAGGATA-ATCTATTTTTA 406 Query 118651 ---GCAACATAAAACTGACTTATGATGTGACATGGAGGCAGAACCATGGAACTCAGTTGG 118707 ||||||| ||||| | ||||| || || || || ||| |||| | | | Sbjct 407 GTATCAACATAGAACTGGCAGATGATATGGCAAGGTGGTAGAGCCATCTTCTTTAAGTCA 466 Query 118708 GCAGGATTCCAGGCTGTTAAAACATGCCTTCTGCTATATGG-TTCTACCTGTATACCCTC 118766 ||| |||||| || | | || | |||| || ||| |||| | | | | | Sbjct 467 GCAACATTCCATGCATTAAGAATAATTCTTCGACTGGTTGGATTCT-CTTTGAGGTCTTT 525 Query 118767 AATTAAATTCTGAATCTGATCCACACCCTTTCCAGTATACTGAGACTCGCATCCT-TTAT 118825 ||| | ||||| ||| ||||| || || | ||| ||| | | | |||| | |||| Sbjct 526 AATAATATTCTTAATTTGATCGACTCCTTGTCCTTCATAGTCA-TCATGCATAGTCTTAT 584 Query 118826 ATTCTGCCCCAAAAAATCTCCATTGAAAACCATAAACAGGCCCCAGATCTCC 118877 |||| || ||||| ||||||||| |||||||| || || || ||||| || Sbjct 585 ATTCAGCTCCAAAGTGTCTCCATTGGAAACCATATACTGGTCCAAGATCACC 636 >seq34388 Length=241 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 118474 TCAATGTGATTCATATAGACATGAGCATCCCCAATTGTATGTATGAATTCACCAGGTGTA 118533 |||| ||| || ||||| || ||||| || | || || ||||| || || | | Sbjct 217 TCAAGGTGGTTTGAATAGATGTGGGCATCACCCAGCGTGTGGATGAACTCGCCGGCCTTG 158 Query 118534 AGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGA 118593 || ||||| | || || | ||||| ||||| ||| |||| || | ||| || ||| Sbjct 157 AGGCCTGTGACATGGGCCACCATGTGTGTCAGCAATGCGTAGGAAGCGATATTGAAGGGA 98 Query 118594 ACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCA 118653 |||||||| || ||||| || | ||| ||||| ||||| || ||| |||| ||| Sbjct 97 ACACCCAGGAAGATATCTGCCGAGCGCTGATACAACTGGCACGACAGCCTGCCGTCAGCA 38 Query 118654 ACATAAAACTG 118664 ||||| ||||| Sbjct 37 ACATAGAACTG 27 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 413925425657728